This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
5qif
From Proteopedia
(Difference between revisions)
| Line 1: | Line 1: | ||
==PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal Structure of HAO1 in complex with Z31792168== | ==PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal Structure of HAO1 in complex with Z31792168== | ||
| - | <StructureSection load='5qif' size='340' side='right' caption='[[5qif]], [[Resolution|resolution]] 1.20Å' scene=''> | + | <StructureSection load='5qif' size='340' side='right'caption='[[5qif]], [[Resolution|resolution]] 1.20Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[5qif]] is a 1 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[5qif]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5QIF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5QIF FirstGlance]. <br> |
| - | </td></tr><tr id=' | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.2Å</td></tr> |
| - | <tr id=' | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=GWS:2-cyclohexyl-~{N}-pyridin-3-yl-ethanamide'>GWS</scene></td></tr> |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5qif FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5qif OCA], [https://pdbe.org/5qif PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5qif RCSB], [https://www.ebi.ac.uk/pdbsum/5qif PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5qif ProSAT]</span></td></tr> | |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | |
</table> | </table> | ||
== Function == | == Function == | ||
| - | [ | + | [https://www.uniprot.org/uniprot/HAOX1_HUMAN HAOX1_HUMAN] Has 2-hydroxyacid oxidase activity. Most active on the 2-carbon substrate glycolate, but is also active on 2-hydroxy fatty acids, with high activity towards 2-hydroxy palmitate and 2-hydroxy octanoate. |
| + | |||
| + | ==See Also== | ||
| + | *[[Glycolate oxidase 3D structures|Glycolate oxidase 3D structures]] | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: | + | [[Category: Homo sapiens]] |
| - | [[Category: Arrowsmith | + | [[Category: Large Structures]] |
| - | [[Category: Bezerra | + | [[Category: Arrowsmith CH]] |
| - | [[Category: Bountra | + | [[Category: Bezerra GA]] |
| - | [[Category: Bradley | + | [[Category: Bountra C]] |
| - | [[Category: Brandao-Neto | + | [[Category: Bradley AR]] |
| - | [[Category: Brennan | + | [[Category: Brandao-Neto J]] |
| - | + | [[Category: Brennan PE]] | |
| - | [[Category: Douangamath | + | [[Category: Douangamath A]] |
| - | [[Category: Edwards | + | [[Category: Edwards A]] |
| - | [[Category: Krojer | + | [[Category: Krojer T]] |
| - | [[Category: MacKinnon | + | [[Category: MacKinnon S]] |
| - | [[Category: Oppermann | + | [[Category: Oppermann U]] |
| - | [[Category: Talon | + | [[Category: Talon R]] |
| - | [[Category: Yue | + | [[Category: Yue WW]] |
| - | [[Category: | + | [[Category: Von Delft F]] |
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal Structure of HAO1 in complex with Z31792168
| |||||||||||
Categories: Homo sapiens | Large Structures | Arrowsmith CH | Bezerra GA | Bountra C | Bradley AR | Brandao-Neto J | Brennan PE | Douangamath A | Edwards A | Krojer T | MacKinnon S | Oppermann U | Talon R | Yue WW | Von Delft F
