1kr7

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Current revision (07:27, 14 February 2024) (edit) (undo)
 
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<StructureSection load='1kr7' size='340' side='right'caption='[[1kr7]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
<StructureSection load='1kr7' size='340' side='right'caption='[[1kr7]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[1kr7]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Cerla Cerla]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KR7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1KR7 FirstGlance]. <br>
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<table><tr><td colspan='2'>[[1kr7]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Cerebratulus_lacteus Cerebratulus lacteus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KR7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1KR7 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=OXY:OXYGEN+MOLECULE'>OXY</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=OXY:OXYGEN+MOLECULE'>OXY</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1kr7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kr7 OCA], [https://pdbe.org/1kr7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1kr7 RCSB], [https://www.ebi.ac.uk/pdbsum/1kr7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1kr7 ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1kr7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kr7 OCA], [https://pdbe.org/1kr7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1kr7 RCSB], [https://www.ebi.ac.uk/pdbsum/1kr7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1kr7 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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[[https://www.uniprot.org/uniprot/GLBN_CERLA GLBN_CERLA]] Acts as an oxygen store capable of sustaining neuronal activity in an anoxic environment for 5 to 30 min.
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[https://www.uniprot.org/uniprot/GLBN_CERLA GLBN_CERLA] Acts as an oxygen store capable of sustaining neuronal activity in an anoxic environment for 5 to 30 min.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1kr7 ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1kr7 ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
 
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== Publication Abstract from PubMed ==
 
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A very short hemoglobin (CerHb; 109 amino acids) binds O(2) cooperatively in the nerve tissue of the nemertean worm Cerebratulus lacteus to sustain neural activity during anoxia. Sequence analysis suggests that CerHb tertiary structure may be unique among the known globin fold evolutionary variants. The X-ray structure of oxygenated CerHb (R factor 15.3%, at 1.5 A resolution) displays deletion of the globin N-terminal A helix, an extended GH region, a very short H helix, and heme solvent shielding based on specific aromatic residues. The heme-bound O(2) is stabilized by hydrogen bonds to the distal TyrB10-GlnE7 pair. Ligand access to heme may take place through a wide protein matrix tunnel connecting the distal site to a surface cleft located between the E and H helices.
 
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The 109 residue nerve tissue minihemoglobin from Cerebratulus lacteus highlights striking structural plasticity of the alpha-helical globin fold.,Pesce A, Nardini M, Dewilde S, Geuens E, Yamauchi K, Ascenzi P, Riggs AF, Moens L, Bolognesi M Structure. 2002 May;10(5):725-35. PMID:12015154<ref>PMID:12015154</ref>
 
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
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</div>
 
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<div class="pdbe-citations 1kr7" style="background-color:#fffaf0;"></div>
 
==See Also==
==See Also==
*[[Hemoglobin 3D structures|Hemoglobin 3D structures]]
*[[Hemoglobin 3D structures|Hemoglobin 3D structures]]
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== References ==
 
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<references/>
 
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Cerla]]
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[[Category: Cerebratulus lacteus]]
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Ascenzi, P]]
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[[Category: Ascenzi P]]
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[[Category: Bolognesi, M]]
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[[Category: Bolognesi M]]
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[[Category: Dewilde, S]]
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[[Category: Dewilde S]]
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[[Category: Geuens, E]]
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[[Category: Geuens E]]
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[[Category: Moens, L]]
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[[Category: Moens L]]
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[[Category: Nardini, M]]
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[[Category: Nardini M]]
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[[Category: Pesce, A]]
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[[Category: Pesce A]]
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[[Category: Riggs, A F]]
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[[Category: Riggs AF]]
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[[Category: Yamauchi, k]]
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[[Category: Yamauchi k]]
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[[Category: Mini-hemoglobin]]
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[[Category: Nerve tissue]]
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[[Category: Oxygen storage-transport complex]]
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[[Category: Oxygen transport]]
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[[Category: Protein cavity]]
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Current revision

Crystal structure of the nerve tissue mini-hemoglobin from the nemertean worm Cerebratulus lacteus

PDB ID 1kr7

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