1o0q

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Current revision (08:01, 14 February 2024) (edit) (undo)
 
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<StructureSection load='1o0q' size='340' side='right'caption='[[1o0q]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
<StructureSection load='1o0q' size='340' side='right'caption='[[1o0q]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[1o0q]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_sp._'tac_ii_18' Pseudomonas sp. 'tac ii 18']. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1O0Q OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1O0Q FirstGlance]. <br>
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<table><tr><td colspan='2'>[[1o0q]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_sp._'TAC_II_18' Pseudomonas sp. 'TAC II 18']. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1O0Q OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1O0Q FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1g9k|1g9k]], [[1h71|1h71]], [[1o0t|1o0t]], [[1om6|1om6]], [[1om7|1om7]], [[1om8|1om8]]</div></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Serralysin Serralysin], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.24.40 3.4.24.40] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1o0q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1o0q OCA], [https://pdbe.org/1o0q PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1o0q RCSB], [https://www.ebi.ac.uk/pdbsum/1o0q PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1o0q ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1o0q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1o0q OCA], [https://pdbe.org/1o0q PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1o0q RCSB], [https://www.ebi.ac.uk/pdbsum/1o0q PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1o0q ProSAT]</span></td></tr>
</table>
</table>
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== Function ==
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[https://www.uniprot.org/uniprot/O69771_9PSED O69771_9PSED]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1o0q ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1o0q ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
 
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== Publication Abstract from PubMed ==
 
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The psychrophilic alkaline metalloprotease (PAP) produced by a Pseudomonas bacterium isolated in Antarctica belongs to the clan of metzincins, for which a zinc ion is essential for catalytic activity. Binding studies in the crystalline state have been performed by X-ray crystallography in order to improve the understanding of the role of the zinc and calcium ions bound to this protease. Cocrystallization and soaking experiments with EDTA in a concentration range from 1 to 85 mM have resulted in five three-dimensional structures with a distinct number of metal ions occupying the ion-binding sites. Evolution of the structural changes observed in the vicinity of each cation-binding site has been studied as a function of the concentration of EDTA, as well as of time, in the presence of the chelator. Among others, we have found that the catalytic zinc ion was the first ion to be chelated, ahead of a weakly bound calcium ion (Ca 700) exclusive to the psychrophilic enzyme. Upon removal of the catalytic zinc ion, the side chains of the active-site residues His-173, His-179 and Tyr-209 shifted approximately 4, 1.0, and 1.6 A, respectively. Our studies confirm and also explain the sensitivity of PAP toward moderate EDTA concentrations and propose distinct roles for the calcium ions. A new crystal form of native PAP validates our previous predictions regarding the adaptation of this enzyme to cold environments as well as the proteolytic domain calcium ion being exclusive for PAP independent of crystallization conditions.
 
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Probing the role of divalent metal ions in a bacterial psychrophilic metalloprotease: binding studies of an enzyme in the crystalline state by x-ray crystallography.,Ravaud S, Gouet P, Haser R, Aghajari N J Bacteriol. 2003 Jul;185(14):4195-203. PMID:12837794<ref>PMID:12837794</ref>
 
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
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</div>
 
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<div class="pdbe-citations 1o0q" style="background-color:#fffaf0;"></div>
 
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== References ==
 
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<references/>
 
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Pseudomonas sp. 'tac ii 18']]
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[[Category: Pseudomonas sp. 'TAC II 18']]
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[[Category: Serralysin]]
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[[Category: Aghajari N]]
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[[Category: Aghajari, N]]
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[[Category: Gouet P]]
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[[Category: Gouet, P]]
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[[Category: Haser R]]
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[[Category: Haser, R]]
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[[Category: Ravaud S]]
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[[Category: Ravaud, S]]
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[[Category: Beta jelly roll]]
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[[Category: Hydrolase]]
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Current revision

Crystal structure of a cold adapted alkaline protease from Pseudomonas TAC II 18, co-crystallized with 1 mM EDTA

PDB ID 1o0q

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