1q8r

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Current revision (08:13, 14 February 2024) (edit) (undo)
 
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<StructureSection load='1q8r' size='340' side='right'caption='[[1q8r]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
<StructureSection load='1q8r' size='340' side='right'caption='[[1q8r]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[1q8r]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Q8R OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1Q8R FirstGlance]. <br>
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<table><tr><td colspan='2'>[[1q8r]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Q8R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Q8R FirstGlance]. <br>
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</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">rusa ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.899&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1q8r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1q8r OCA], [http://pdbe.org/1q8r PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1q8r RCSB], [http://www.ebi.ac.uk/pdbsum/1q8r PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1q8r ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1q8r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1q8r OCA], [https://pdbe.org/1q8r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1q8r RCSB], [https://www.ebi.ac.uk/pdbsum/1q8r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1q8r ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/RUSA_ECOLI RUSA_ECOLI]] Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of CC dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC.
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[https://www.uniprot.org/uniprot/RUSA_ECOLI RUSA_ECOLI] Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of CC dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1q8r ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1q8r ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
 
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== Publication Abstract from PubMed ==
 
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Holliday junction resolution performed by a variety of structure-specific endonucleases is a key step in DNA recombination and repair. It is believed that all resolvases carry out their reaction chemistries in a similar fashion, utilizing a divalent cation to facilitate the hydrolysis of the phosphodiester backbone of the DNA, but their architecture varies. To date, with the exception of bacteriophage T4 endonuclease VII, each of the known resolvase enzyme structures has been categorized into one of two families: the integrases and the nucleases. We have now determined the structure of the Escherichia coli RusA Holliday junction resolvase, which reveals a fourth structural class for these enzymes. The structure suggests that dimer formation is essential for Mg(2+) cation binding and hence catalysis and that like the other resolvases, RusA distorts its Holliday junction target upon binding. Key residues identified by mutagenesis experiments are well positioned to interact with the DNA.
 
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The structure of Escherichia coli RusA endonuclease reveals a new Holliday junction DNA binding fold.,Rafferty JB, Bolt EL, Muranova TA, Sedelnikova SE, Leonard P, Pasquo A, Baker PJ, Rice DW, Sharples GJ, Lloyd RG Structure. 2003 Dec;11(12):1557-67. PMID:14656440<ref>PMID:14656440</ref>
 
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
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</div>
 
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<div class="pdbe-citations 1q8r" style="background-color:#fffaf0;"></div>
 
==See Also==
==See Also==
*[[Resolvase 3D structures|Resolvase 3D structures]]
*[[Resolvase 3D structures|Resolvase 3D structures]]
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== References ==
 
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<references/>
 
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Bacillus coli migula 1895]]
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[[Category: Escherichia coli]]
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Baker, P J]]
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[[Category: Baker PJ]]
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[[Category: Bolt, E L]]
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[[Category: Bolt EL]]
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[[Category: Leonard, P]]
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[[Category: Leonard P]]
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[[Category: Lloyd, R G]]
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[[Category: Lloyd RG]]
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[[Category: Muranova, T A]]
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[[Category: Muranova TA]]
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[[Category: Pasquo, A]]
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[[Category: Pasquo A]]
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[[Category: Rafferty, J B]]
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[[Category: Rafferty JB]]
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[[Category: Rice, D W]]
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[[Category: Rice DW]]
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[[Category: Sedelnikova, S E]]
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[[Category: Sedelnikova SE]]
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[[Category: Sharples, G J]]
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[[Category: Sharples GJ]]
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[[Category: Chorismate mutase-like fold]]
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[[Category: Extended mixed beta sheet]]
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[[Category: Hydrolase]]
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[[Category: Recombination]]
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Current revision

Structure of E.coli RusA Holliday junction resolvase

PDB ID 1q8r

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