1rcy

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:22, 14 February 2024) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='1rcy' size='340' side='right'caption='[[1rcy]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
<StructureSection load='1rcy' size='340' side='right'caption='[[1rcy]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1rcy]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"ferrobacillus_ferrooxidans"_leathen_and_braley_1954 "ferrobacillus ferrooxidans" leathen and braley 1954]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RCY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1RCY FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1rcy]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Acidithiobacillus_ferrooxidans Acidithiobacillus ferrooxidans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RCY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1RCY FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1rcy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rcy OCA], [https://pdbe.org/1rcy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1rcy RCSB], [https://www.ebi.ac.uk/pdbsum/1rcy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1rcy ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1rcy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rcy OCA], [https://pdbe.org/1rcy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1rcy RCSB], [https://www.ebi.ac.uk/pdbsum/1rcy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1rcy ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[https://www.uniprot.org/uniprot/RUS2_THIFE RUS2_THIFE]] Electron carrier from cytochrome c552 to the A-type oxidase.
+
[https://www.uniprot.org/uniprot/RUS2_ACIFI RUS2_ACIFI] Electron carrier from cytochrome c552 to the A-type oxidase.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 19: Line 20:
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1rcy ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1rcy ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
-
<div style="background-color:#fffaf0;">
 
-
== Publication Abstract from PubMed ==
 
-
The X-ray crystal structure of the oxidized form of the extremely stable and highly oxidizing cupredoxin rusticyanin from Thiobacillus ferrooxidans has been determined by the method of multiwavelength anomalous diffraction (MAD) and refined to 1.9 A resolution. Like other cupredoxins, rusticyanin is a copper-containing metalloprotein, which is composed of a core beta-sandwich fold. In rusticyanin the beta-sandwich is composed of a six- and a seven-stranded beta-sheet. Also like other cupredoxins, the copper ion is coordinated by a cluster of four conserved residues (His85, Cys138, His143, Met148) arranged in a distorted tetrahedron. Rusticyanin has a redox potential of 680 mV, roughly twice that of any other cupredoxin, and it is optimally active at pH values &lt; or = 2. By comparison with other cupredoxins, the three-dimensional structure of rusticyanin reveals several possible sources of the chemical differences, including more ordered secondary structure and more intersheet connectivity than other cupredoxins. The acid stability and redox potential of rusticyanin may also be enhanced over other cupredoxins by a more extensive internal hydrogen bonding network and by more extensive hydrophobic interactions surrounding the copper binding site. Finally, reduction in the number of charged residues surrounding the active site may also make a major contribution to acid stability. We propose that the resulting rigid copper binding site, which is constrained by the surrounding hydrophobic environment, structurally and electronically favours Cu(I). We propose that the two extreme chemical properties of rusticyanin are interrelated; the same unique structural features that enhance acid stability also lead to elevated redox potential.
 
- 
-
Multiple wavelength anomalous diffraction (MAD) crystal structure of rusticyanin: a highly oxidizing cupredoxin with extreme acid stability.,Walter RL, Ealick SE, Friedman AM, Blake RC 2nd, Proctor P, Shoham M J Mol Biol. 1996 Nov 15;263(5):730-51. PMID:8947572<ref>PMID:8947572</ref>
 
- 
-
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
-
</div>
 
-
<div class="pdbe-citations 1rcy" style="background-color:#fffaf0;"></div>
 
-
== References ==
 
-
<references/>
 
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Ferrobacillus ferrooxidans leathen and braley 1954]]
+
[[Category: Acidithiobacillus ferrooxidans]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Ealick, S E]]
+
[[Category: Blake II RC]]
-
[[Category: Friedman, A M]]
+
[[Category: Ealick SE]]
-
[[Category: II, R C.Blake]]
+
[[Category: Friedman AM]]
-
[[Category: Proctor, P]]
+
[[Category: Proctor P]]
-
[[Category: Shoham, M]]
+
[[Category: Shoham M]]
-
[[Category: Walter, R L]]
+
[[Category: Walter RL]]
-
[[Category: Copper containing protein]]
+
-
[[Category: Metalloprotein]]
+
-
[[Category: Oxidation potential]]
+
-
[[Category: Ph stability]]
+
-
[[Category: Redox protein]]
+

Current revision

RUSTICYANIN (RC) FROM THIOBACILLUS FERROOXIDANS

PDB ID 1rcy

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools