1t6l
From Proteopedia
(Difference between revisions)
Line 3: | Line 3: | ||
<StructureSection load='1t6l' size='340' side='right'caption='[[1t6l]], [[Resolution|resolution]] 1.85Å' scene=''> | <StructureSection load='1t6l' size='340' side='right'caption='[[1t6l]], [[Resolution|resolution]] 1.85Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>[[1t6l]] is a 1 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[1t6l]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Human_betaherpesvirus_5 Human betaherpesvirus 5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1T6L OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1T6L FirstGlance]. <br> |
- | </td></tr><tr id=' | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.85Å</td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1t6l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1t6l OCA], [https://pdbe.org/1t6l PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1t6l RCSB], [https://www.ebi.ac.uk/pdbsum/1t6l PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1t6l ProSAT]</span></td></tr> |
</table> | </table> | ||
== Function == | == Function == | ||
- | [ | + | [https://www.uniprot.org/uniprot/VPAP_HCMVA VPAP_HCMVA] Accessory subunit of the DNA polymerase that acts to increase the processivity of polymerization.<ref>PMID:20538862</ref> |
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Line 19: | Line 19: | ||
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1t6l ConSurf]. | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1t6l ConSurf]. | ||
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
- | <div style="background-color:#fffaf0;"> | ||
- | == Publication Abstract from PubMed == | ||
- | The human cytomegalovirus DNA polymerase consists of a catalytic subunit, UL54, and a presumed processivity factor, UL44. We have solved the crystal structure of residues 1-290 of UL44 to 1.85 A resolution by multiwavelength anomalous dispersion. The structure reveals a dimer of UL44 in the shape of a C clamp. Each monomer of UL44 shares its overall fold with other processivity factors, including herpes simplex virus UL42, which is a monomer that binds DNA directly, and the sliding clamp, PCNA, which is a trimer that surrounds DNA, although these proteins share no obvious sequence homology. Analytical ultracentrifugation and gel filtration measurements demonstrated that UL44 also forms a dimer in solution, and substitution of large hydrophobic residues along the homodimer interface with alanine disrupted dimerization and decreased DNA binding. UL44 represents a hybrid processivity factor as it binds DNA directly like UL42, but forms a C clamp that may surround DNA like PCNA. | ||
- | |||
- | The cytomegalovirus DNA polymerase subunit UL44 forms a C clamp-shaped dimer.,Appleton BA, Loregian A, Filman DJ, Coen DM, Hogle JM Mol Cell. 2004 Jul 23;15(2):233-44. PMID:15260974<ref>PMID:15260974</ref> | ||
- | |||
- | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
- | </div> | ||
- | <div class="pdbe-citations 1t6l" style="background-color:#fffaf0;"></div> | ||
== References == | == References == | ||
<references/> | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
- | [[Category: | + | [[Category: Human betaherpesvirus 5]] |
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
- | [[Category: Appleton | + | [[Category: Appleton BA]] |
- | [[Category: Coen | + | [[Category: Coen DM]] |
- | [[Category: Filman | + | [[Category: Filman DJ]] |
- | [[Category: Hogle | + | [[Category: Hogle JM]] |
- | [[Category: Loregian | + | [[Category: Loregian A]] |
- | + | ||
- | + |
Current revision
Crystal Structure of the Human Cytomegalovirus DNA Polymerase Subunit, UL44
|