2ba2
From Proteopedia
(Difference between revisions)
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<StructureSection load='2ba2' size='340' side='right'caption='[[2ba2]], [[Resolution|resolution]] 1.80Å' scene=''> | <StructureSection load='2ba2' size='340' side='right'caption='[[2ba2]], [[Resolution|resolution]] 1.80Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>[[2ba2]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/ | + | <table><tr><td colspan='2'>[[2ba2]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycoplasma_pneumoniae Mycoplasma pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BA2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2BA2 FirstGlance]. <br> |
- | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ba2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ba2 OCA], [https://pdbe.org/2ba2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ba2 RCSB], [https://www.ebi.ac.uk/pdbsum/2ba2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ba2 ProSAT], [https://www.topsan.org/Proteins/BSGC/2ba2 TOPSAN]</span></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8Å</td></tr> |
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ba2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ba2 OCA], [https://pdbe.org/2ba2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ba2 RCSB], [https://www.ebi.ac.uk/pdbsum/2ba2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ba2 ProSAT], [https://www.topsan.org/Proteins/BSGC/2ba2 TOPSAN]</span></td></tr> | ||
</table> | </table> | ||
+ | == Function == | ||
+ | [https://www.uniprot.org/uniprot/Y010_MYCPN Y010_MYCPN] | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ba2 ConSurf]. | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ba2 ConSurf]. | ||
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
- | <div style="background-color:#fffaf0;"> | ||
- | == Publication Abstract from PubMed == | ||
- | We have determined the crystal structure of the DUF16 domain of unknown function encoded by the gene MPN010 of Mycoplasma pneumoniae at 1.8 A resolution. The crystal structure revealed that this domain is composed of two separated homotrimeric coiled-coils. The shorter one consists of 11 highly conserved residues. The sequence comprises noncanonical heptad repeats that induce a right-handed coiled-coil structure. The longer one is composed of approximately nine heptad repeats. In this coiled-coil structure, there are three distinguishable regions that confer unique structural properties compared with other known homotrimeric coiled-coils. The first part, containing one stutter, is an unusual phenylalanine-rich region that is not found in any other coiled-coil structures. The second part is a highly conserved glutamine-rich region, frequently found in other trimeric coiled-coil structures. The last part is composed of prototype heptad repeats. The phylogenetic analysis of the DUF16 family together with a secondary structure prediction shows that the DUF16 family can be classified into five subclasses according to N-terminal sequences. Based on the structural comparison with other coiled-coil structures, a probable molecular function of the DUF16 family is discussed. | ||
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- | Crystal structure of the DUF16 domain of MPN010 from Mycoplasma pneumoniae.,Shin DH, Kim JS, Yokota H, Kim R, Kim SH Protein Sci. 2006 Apr;15(4):921-8. Epub 2006 Mar 7. PMID:16522803<ref>PMID:16522803</ref> | ||
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- | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
- | </div> | ||
- | <div class="pdbe-citations 2ba2" style="background-color:#fffaf0;"></div> | ||
- | == References == | ||
- | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
- | [[Category: Filterable agent of primary atypical pneumonia eaton et al. 1944]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
- | [[Category: | + | [[Category: Mycoplasma pneumoniae]] |
- | [[Category: Kim | + | [[Category: Kim J-S]] |
- | [[Category: Kim | + | [[Category: Kim R]] |
- | [[Category: Kim | + | [[Category: Kim S-H]] |
- | [[Category: Shin | + | [[Category: Shin DH]] |
- | [[Category: Yokota | + | [[Category: Yokota H]] |
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Current revision
Crystal structure of the DUF16 domain of MPN010 from Mycoplasma pneumoniae
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