2p6p

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:08, 21 February 2024) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='2p6p' size='340' side='right'caption='[[2p6p]], [[Resolution|resolution]] 1.88&Aring;' scene=''>
<StructureSection load='2p6p' size='340' side='right'caption='[[2p6p]], [[Resolution|resolution]] 1.88&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2p6p]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/"actinomyces_fradii"_(sic)_waksman_and_curtis_1916 "actinomyces fradii" (sic) waksman and curtis 1916]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P6P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2P6P FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2p6p]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_fradiae Streptomyces fradiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P6P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2P6P FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.88&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">urdGT2 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1906 "Actinomyces fradii" (sic) Waksman and Curtis 1916])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2p6p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p6p OCA], [https://pdbe.org/2p6p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2p6p RCSB], [https://www.ebi.ac.uk/pdbsum/2p6p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2p6p ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2p6p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p6p OCA], [https://pdbe.org/2p6p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2p6p RCSB], [https://www.ebi.ac.uk/pdbsum/2p6p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2p6p ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q9RPA7_STRFR Q9RPA7_STRFR]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 18: Line 20:
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2p6p ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2p6p ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
-
<div style="background-color:#fffaf0;">
 
-
== Publication Abstract from PubMed ==
 
-
The glycosyltransferase UrdGT2 from Streptomyces fradiae catalyzes the formation of a glycosidic C-C bond between a polyketide aglycone and D-olivose. The enyzme was expressed in Escherichia coli, purified and crystallized. Its structure was established by X-ray diffraction at 1.9 A resolution. It is the first structure of a C-glycosyltransferase. UrdGT2 belongs to the structural family GT-B of the glycosyltransferases and is likely to form a C(2)-symmetric dimer in solution. The binding structures of donor and acceptor substrates in five structurally homologous enzymes provided a clear and consistent guide for the substrate-binding structure in UrdGT2. The modeled substrate locations suggest the deeply buried Asp137 as the activator for C-C bond formation and explain the reaction. The putative model can be used to design mutations that change the substrate specificity. Such mutants are of great interest in overcoming the increasing danger of antibiotic resistance.
 
- 
-
Structure and action of the C-C bond-forming glycosyltransferase UrdGT2 involved in the biosynthesis of the antibiotic urdamycin.,Mittler M, Bechthold A, Schulz GE J Mol Biol. 2007 Sep 7;372(1):67-76. Epub 2007 Jun 9. PMID:17640665<ref>PMID:17640665</ref>
 
- 
-
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
-
</div>
 
-
<div class="pdbe-citations 2p6p" style="background-color:#fffaf0;"></div>
 
-
== References ==
 
-
<references/>
 
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Bechthold, A]]
+
[[Category: Streptomyces fradiae]]
-
[[Category: Mittler, M]]
+
[[Category: Bechthold A]]
-
[[Category: Schulz, G E]]
+
[[Category: Mittler M]]
-
[[Category: C-glycosyltransferase]]
+
[[Category: Schulz GE]]
-
[[Category: Dtdp-d-olivose-transferase]]
+
-
[[Category: Gt-b family]]
+
-
[[Category: Polyketide aglycon]]
+
-
[[Category: Transferase]]
+
-
[[Category: Urdamycina-biosynthesis]]
+
-
[[Category: X-ray-diffraction]]
+

Current revision

X-ray crystal structure of C-C bond-forming dTDP-D-Olivose-transferase UrdGT2

PDB ID 2p6p

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools