3c01

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Current revision (09:32, 21 February 2024) (edit) (undo)
 
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<StructureSection load='3c01' size='340' side='right'caption='[[3c01]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
<StructureSection load='3c01' size='340' side='right'caption='[[3c01]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[3c01]] is a 8 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C01 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3C01 FirstGlance]. <br>
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<table><tr><td colspan='2'>[[3c01]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_Typhimurium Salmonella enterica subsp. enterica serovar Typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C01 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3C01 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CYS:CYSTEINE'>CYS</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3bzo|3bzo]], [[3bzp|3bzp]], [[3bzr|3bzr]], [[3bzs|3bzs]], [[3bzt|3bzt]], [[3bzv|3bzv]], [[3bzx|3bzx]], [[3bzy|3bzy]], [[3bzl|3bzl]], [[3c00|3c00]], [[3bzz|3bzz]], [[3c03|3c03]]</div></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CYS:CYSTEINE'>CYS</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3c01 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3c01 OCA], [https://pdbe.org/3c01 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3c01 RCSB], [https://www.ebi.ac.uk/pdbsum/3c01 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3c01 ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3c01 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3c01 OCA], [https://pdbe.org/3c01 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3c01 RCSB], [https://www.ebi.ac.uk/pdbsum/3c01 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3c01 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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[[https://www.uniprot.org/uniprot/SPAS_SALTY SPAS_SALTY]] Involved in a secretory pathway responsible for the surface presentation of determinants needed for the entry of Salmonella species into mammalian cells.
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[https://www.uniprot.org/uniprot/SPAS_SALTY SPAS_SALTY] Involved in a secretory pathway responsible for the surface presentation of determinants needed for the entry of Salmonella species into mammalian cells.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3c01 ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3c01 ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
 
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== Publication Abstract from PubMed ==
 
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During infection by Gram-negative pathogenic bacteria, the type III secretion system (T3SS) is assembled to allow for the direct transmission of bacterial virulence effectors into the host cell. The T3SS system is characterized by a series of prominent multi-component rings in the inner and outer bacterial membranes, as well as a translocation pore in the host cell membrane. These are all connected by a series of polymerized tubes that act as the direct conduit for the T3SS proteins to pass through to the host cell. During assembly of the T3SS, as well as the evolutionarily related flagellar apparatus, a post-translational cleavage event within the inner membrane proteins EscU/FlhB is required to promote a secretion-competent state. These proteins have long been proposed to act as a part of a molecular switch, which would regulate the appropriate chronological secretion of the various T3SS apparatus components during assembly and subsequently the transported virulence effectors. Here we show that a surface type II beta-turn in the Escherichia coli protein EscU undergoes auto-cleavage by a mechanism involving cyclization of a strictly conserved asparagine residue. Structural and in vivo analysis of point and deletion mutations illustrates the subtle conformational effects of auto-cleavage in modulating the molecular features of a highly conserved surface region of EscU, a potential point of interaction with other T3SS components at the inner membrane. In addition, this work provides new structural insight into the distinct conformational requirements for a large class of self-cleaving reactions involving asparagine cyclization.
 
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Structural analysis of the essential self-cleaving type III secretion proteins EscU and SpaS.,Zarivach R, Deng W, Vuckovic M, Felise HB, Nguyen HV, Miller SI, Finlay BB, Strynadka NC Nature. 2008 May 1;453(7191):124-7. PMID:18451864<ref>PMID:18451864</ref>
 
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
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</div>
 
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<div class="pdbe-citations 3c01" style="background-color:#fffaf0;"></div>
 
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== References ==
 
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<references/>
 
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Deng, W]]
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[[Category: Salmonella enterica subsp. enterica serovar Typhimurium]]
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[[Category: Felise, H B]]
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[[Category: Deng W]]
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[[Category: Finlay, B B]]
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[[Category: Felise HB]]
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[[Category: Miller, S I]]
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[[Category: Finlay BB]]
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[[Category: Nguyen, H V]]
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[[Category: Miller SI]]
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[[Category: Strynadka, N C.J]]
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[[Category: Nguyen HV]]
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[[Category: Vuckovic, M]]
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[[Category: Strynadka NCJ]]
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[[Category: Zarivach, R]]
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[[Category: Vuckovic M]]
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[[Category: Auto cleavage protein]]
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[[Category: Zarivach R]]
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[[Category: Escu]]
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[[Category: Flagella]]
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[[Category: Inner membrane]]
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[[Category: Intein]]
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[[Category: Membrane]]
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[[Category: Membrane protein]]
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[[Category: Protein transport]]
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[[Category: T3ss]]
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[[Category: Transmembrane]]
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[[Category: Virulence]]
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[[Category: Yscu]]
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Current revision

Crystal structural of native SpaS C-terminal domain

PDB ID 3c01

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