3dms
From Proteopedia
(Difference between revisions)
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<StructureSection load='3dms' size='340' side='right'caption='[[3dms]], [[Resolution|resolution]] 1.65Å' scene=''> | <StructureSection load='3dms' size='340' side='right'caption='[[3dms]], [[Resolution|resolution]] 1.65Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[3dms]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/ | + | <table><tr><td colspan='2'>[[3dms]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Burkholderia_pseudomallei Burkholderia pseudomallei]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DMS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DMS FirstGlance]. <br> |
| - | </td></tr><tr id=' | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.65Å</td></tr> |
| - | + | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dms FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dms OCA], [https://pdbe.org/3dms PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dms RCSB], [https://www.ebi.ac.uk/pdbsum/3dms PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dms ProSAT], [https://www.topsan.org/Proteins/SSGCID/3dms TOPSAN]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dms FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dms OCA], [https://pdbe.org/3dms PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dms RCSB], [https://www.ebi.ac.uk/pdbsum/3dms PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dms ProSAT], [https://www.topsan.org/Proteins/SSGCID/3dms TOPSAN]</span></td></tr> | ||
</table> | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/Q3JV82_BURP1 Q3JV82_BURP1] | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dms ConSurf]. | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dms ConSurf]. | ||
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
| - | <div style="background-color:#fffaf0;"> | ||
| - | == Publication Abstract from PubMed == | ||
| - | Isocitrate dehydrogenase kinase/phosphatase (AceK) regulates entry into the glyoxylate bypass by reversibly phosphorylating isocitrate dehydrogenase (ICDH). On the basis of the recently determined structure of the AceK-ICDH complex from Escherichia coli, we have classified the structures of homodimeric NADP(+)-ICDHs to rationalize and predict which organisms likely contain substrates for AceK. One example is Burkholderia pseudomallei (Bp). Here we report a crystal structure of Bp-ICDH that exhibits the necessary structural elements required for AceK recognition. Kinetic analyses provided further confirmation that Bp-ICDH is a substrate for AceK. We conclude that the highly stringent AceK binding sites on ICDH are maintained only in Gram-negative bacteria. | ||
| - | |||
| - | Structural basis of the substrate specificity of bifunctional isocitrate dehydrogenase kinase/phosphatase.,Yates SP, Edwards TE, Bryan CM, Stein AJ, Van Voorhis WC, Myler PJ, Stewart LJ, Zheng J, Jia Z Biochemistry. 2011 Sep 27;50(38):8103-6. Epub 2011 Sep 2. PMID:21870819<ref>PMID:21870819</ref> | ||
| - | |||
| - | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| - | </div> | ||
| - | <div class="pdbe-citations 3dms" style="background-color:#fffaf0;"></div> | ||
==See Also== | ==See Also== | ||
*[[Isocitrate dehydrogenase 3D structures|Isocitrate dehydrogenase 3D structures]] | *[[Isocitrate dehydrogenase 3D structures|Isocitrate dehydrogenase 3D structures]] | ||
| - | == References == | ||
| - | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: | + | [[Category: Burkholderia pseudomallei]] |
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
| - | [[Category: Structural genomic]] | ||
| - | [[Category: Burkholderia]] | ||
| - | [[Category: Dehydrogenase]] | ||
| - | [[Category: Glyoxylate bypass]] | ||
| - | [[Category: Isocitrate]] | ||
| - | [[Category: Manganese]] | ||
| - | [[Category: Metal-binding]] | ||
| - | [[Category: Nadp]] | ||
| - | [[Category: Oxidoreductase]] | ||
| - | [[Category: Pseudomallei]] | ||
| - | [[Category: Ssgcid]] | ||
| - | [[Category: Tricarboxylic acid cycle]] | ||
Current revision
1.65A crystal structure of isocitrate dehydrogenase from Burkholderia pseudomallei
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