3j3x
From Proteopedia
(Difference between revisions)
| Line 9: | Line 9: | ||
== Function == | == Function == | ||
[https://www.uniprot.org/uniprot/Q877G8_METMI Q877G8_METMI] | [https://www.uniprot.org/uniprot/Q877G8_METMI Q877G8_METMI] | ||
| - | <div style="background-color:#fffaf0;"> | ||
| - | == Publication Abstract from PubMed == | ||
| - | An increasing number of cryo-electron microscopy (cryo-EM) density maps are being generated with suitable resolution to trace the protein backbone and guide sidechain placement. Generating and evaluating atomic models based on such maps would be greatly facilitated by independent validation metrics for assessing the fit of the models to the data. We describe such a metric based on the fit of atomic models with independent test maps from single particle reconstructions not used in model refinement. The metric provides a means to determine the proper balance between the fit to the density and model energy and stereochemistry during refinement, and is likely to be useful in determining values of model building and refinement metaparameters quite generally. | ||
| - | |||
| - | Cryo-EM model validation using independent map reconstructions.,Dimaio F, Zhang J, Chiu W, Baker D Protein Sci. 2013 Jun;22(6):865-8. doi: 10.1002/pro.2267. PMID:23592445<ref>PMID:23592445</ref> | ||
| - | |||
| - | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| - | </div> | ||
| - | <div class="pdbe-citations 3j3x" style="background-color:#fffaf0;"></div> | ||
==See Also== | ==See Also== | ||
*[[Chaperonin 3D structures|Chaperonin 3D structures]] | *[[Chaperonin 3D structures|Chaperonin 3D structures]] | ||
| - | == References == | ||
| - | <references/> | ||
__TOC__ | __TOC__ | ||
</SX> | </SX> | ||
Current revision
Independent reconstruction of Mm-cpn cryo-EM density map from half dataset in the closed state (training map)
| |||||||||
