3jym

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Current revision (10:14, 21 February 2024) (edit) (undo)
 
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<StructureSection load='3jym' size='340' side='right'caption='[[3jym]], [[Resolution|resolution]] 2.28&Aring;' scene=''>
<StructureSection load='3jym' size='340' side='right'caption='[[3jym]], [[Resolution|resolution]] 2.28&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[3jym]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Canadian_hard_winter_wheat Canadian hard winter wheat]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3JYM OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=3JYM FirstGlance]. <br>
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<table><tr><td colspan='2'>[[3jym]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Triticum_aestivum Triticum aestivum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3JYM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3JYM FirstGlance]. <br>
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</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNK:UNKNOWN'>UNK</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.28&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=3jym FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3jym OCA], [http://pdbe.org/3jym PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3jym RCSB], [http://www.ebi.ac.uk/pdbsum/3jym PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3jym ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3jym FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3jym OCA], [https://pdbe.org/3jym PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3jym RCSB], [https://www.ebi.ac.uk/pdbsum/3jym PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3jym ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/FKB70_WHEAT FKB70_WHEAT]] PPIases accelerate the folding of proteins during protein synthesis.
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[https://www.uniprot.org/uniprot/FKB70_WHEAT FKB70_WHEAT] PPIases accelerate the folding of proteins during protein synthesis.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3jym ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3jym ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
 
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== Publication Abstract from PubMed ==
 
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Here we describe the crystal structure of the N-terminal domain of the FK506-binding protein (FKBP) from wheat (wFKBP73), which is the first structure presenting three FK domains (wFK73_1, wFK73_2 and wFK73_3). The crystal model includes wFK73_2 and wFK73_3 domains and only part of the wFK73_1 domain. The wFK73_1 domain is responsible for binding FK506 and for peptidyl prolyl cis/trans isomerase (PPIase) activity, while the wFK73_2 and wFK73_3 domains lack these activities. A structure-based sequence comparison demonstrated that the absence of a large enough hydrophobic pocket important for PPIase activity, and of the conserved residues necessary for drug binding in the wFK73_2 and wFK73_3 domains explains the lack of these activities in these domains. Sequence and structural comparison between the three wFKBP73 domains suggest that the wFK73_2 domain is the most divergent. A structural comparison of the FK domains of wFKBP73 with other FKBPs containing more than one FK domain, revealed that while the overall architecture of each of the three FK domains displays a typical FKBP fold, their relative arrangement in space is unique and may have important functional implications. We suggest that the existence of FKBPs with three FK domains offers additional interactive options for these plant proteins enlarging the overall regulatory functions of these proteins.
 
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Crystal structure of the three FK506 binding protein domains of wheat FKBP73: evidence for a unique wFK73_2 domain.,Unger T, Dym O, Albeck S, Jacobovitch Y, Bernehim R, Marom D, Pisanty O, Breiman A J Struct Funct Genomics. 2010 Jun;11(2):113-23. Epub 2010 Mar 20. PMID:20306145<ref>PMID:20306145</ref>
 
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
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</div>
 
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<div class="pdbe-citations 3jym" style="background-color:#fffaf0;"></div>
 
==See Also==
==See Also==
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*[[FKBP 3D structures|FKBP 3D structures]]
*[[FKBP 3D structures|FKBP 3D structures]]
*[[Human FKBP52|Human FKBP52]]
*[[Human FKBP52|Human FKBP52]]
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*[[Wheat FKBP73|Wheat FKBP73]]
 
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== References ==
 
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<references/>
 
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Canadian hard winter wheat]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Breiman, A]]
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[[Category: Triticum aestivum]]
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[[Category: Dym, O]]
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[[Category: Breiman A]]
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[[Category: ISPC, Israel Structural Proteomics Center]]
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[[Category: Dym O]]
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[[Category: Isomerase]]
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[[Category: Kbp- binding domain five-stranded anti-parallel -sheet and an -helix crossing this sheet]]
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[[Category: Structural genomic]]
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Current revision

Crystal Structure of the 3 FKBP domains of wheat FKBP73

PDB ID 3jym

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