3kln

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:17, 21 February 2024) (edit) (undo)
 
Line 1: Line 1:
==Vibrio cholerae VpsT==
==Vibrio cholerae VpsT==
-
<StructureSection load='3kln' size='340' side='right' caption='[[3kln]], [[Resolution|resolution]] 3.08&Aring;' scene=''>
+
<StructureSection load='3kln' size='340' side='right'caption='[[3kln]], [[Resolution|resolution]] 3.08&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3kln]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/'vibrio_eltor' 'vibrio eltor']. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KLN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3KLN FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3kln]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_cholerae_O1_biovar_El_Tor Vibrio cholerae O1 biovar El Tor]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KLN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3KLN FirstGlance]. <br>
-
</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3klo|3klo]]</td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.078&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">VCA0952, VC_A0952 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=686 'Vibrio eltor'])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3kln FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3kln OCA], [https://pdbe.org/3kln PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3kln RCSB], [https://www.ebi.ac.uk/pdbsum/3kln PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3kln ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3kln FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3kln OCA], [http://pdbe.org/3kln PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3kln RCSB], [http://www.ebi.ac.uk/pdbsum/3kln PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3kln ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q9KKZ8_VIBCH Q9KKZ8_VIBCH]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 18: Line 19:
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3kln ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3kln ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
-
<div style="background-color:#fffaf0;">
 
-
== Publication Abstract from PubMed ==
 
-
Microorganisms can switch from a planktonic, free-swimming life-style to a sessile, colonial state, called a biofilm, which confers resistance to environmental stress. Conversion between the motile and biofilm life-styles has been attributed to increased levels of the prokaryotic second messenger cyclic di-guanosine monophosphate (c-di-GMP), yet the signaling mechanisms mediating such a global switch are poorly understood. Here we show that the transcriptional regulator VpsT from Vibrio cholerae directly senses c-di-GMP to inversely control extracellular matrix production and motility, which identifies VpsT as a master regulator for biofilm formation. Rather than being regulated by phosphorylation, VpsT undergoes a change in oligomerization on c-di-GMP binding.
 
- 
-
Vibrio cholerae VpsT regulates matrix production and motility by directly sensing cyclic di-GMP.,Krasteva PV, Fong JC, Shikuma NJ, Beyhan S, Navarro MV, Yildiz FH, Sondermann H Science. 2010 Feb 12;327(5967):866-8. PMID:20150502<ref>PMID:20150502</ref>
 
- 
-
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
-
</div>
 
-
<div class="pdbe-citations 3kln" style="background-color:#fffaf0;"></div>
 
-
== References ==
 
-
<references/>
 
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Vibrio eltor]]
+
[[Category: Large Structures]]
-
[[Category: Krasteva, P V]]
+
[[Category: Vibrio cholerae O1 biovar El Tor]]
-
[[Category: Navarro, V A.S]]
+
[[Category: Krasteva PV]]
-
[[Category: Sondermann, H]]
+
[[Category: Navarro VAS]]
-
[[Category: Dna-binding]]
+
[[Category: Sondermann H]]
-
[[Category: Hth domain]]
+
-
[[Category: Rec domain]]
+
-
[[Category: Transcription]]
+
-
[[Category: Transcription regulation]]
+

Current revision

Vibrio cholerae VpsT

PDB ID 3kln

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools