3kzq

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:18, 21 February 2024) (edit) (undo)
 
Line 1: Line 1:
==The crystal structure of the protein with unknown function from Vibrio parahaemolyticus RIMD 2210633==
==The crystal structure of the protein with unknown function from Vibrio parahaemolyticus RIMD 2210633==
-
<StructureSection load='3kzq' size='340' side='right' caption='[[3kzq]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
+
<StructureSection load='3kzq' size='340' side='right'caption='[[3kzq]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3kzq]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/"oceanomonas_parahaemolytica"_(fujino_et_al._1951)_miyamoto_et_al._1961 "oceanomonas parahaemolytica" (fujino et al. 1951) miyamoto et al. 1961]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KZQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3KZQ FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3kzq]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_parahaemolyticus Vibrio parahaemolyticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KZQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3KZQ FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PG6:1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE'>PG6</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">GI:28807109, VP2116 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=670 "Oceanomonas parahaemolytica" (Fujino et al. 1951) Miyamoto et al. 1961])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PG6:1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE'>PG6</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3kzq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3kzq OCA], [http://pdbe.org/3kzq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3kzq RCSB], [http://www.ebi.ac.uk/pdbsum/3kzq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3kzq ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3kzq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3kzq OCA], [https://pdbe.org/3kzq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3kzq RCSB], [https://www.ebi.ac.uk/pdbsum/3kzq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3kzq ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q87MW5_VIBPA Q87MW5_VIBPA]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kz/3kzq_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kz/3kzq_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 20: Line 22:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Joachimiak, A]]
+
[[Category: Large Structures]]
-
[[Category: Structural genomic]]
+
-
[[Category: Shackelford, G]]
+
-
[[Category: Weger, A]]
+
-
[[Category: Zhang, R]]
+
-
[[Category: Mcsg]]
+
-
[[Category: PSI, Protein structure initiative]]
+
-
[[Category: Protein with unknown function]]
+
-
[[Category: Unknown function]]
+
[[Category: Vibrio parahaemolyticus]]
[[Category: Vibrio parahaemolyticus]]
 +
[[Category: Joachimiak A]]
 +
[[Category: Shackelford G]]
 +
[[Category: Weger A]]
 +
[[Category: Zhang R]]

Current revision

The crystal structure of the protein with unknown function from Vibrio parahaemolyticus RIMD 2210633

PDB ID 3kzq

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools