3n4t

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Current revision (10:27, 21 February 2024) (edit) (undo)
 
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==apo APH(2")-IVa form I==
==apo APH(2")-IVa form I==
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<StructureSection load='3n4t' size='340' side='right' caption='[[3n4t]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
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<StructureSection load='3n4t' size='340' side='right'caption='[[3n4t]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[3n4t]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"streptococcus_casseliflavus"_vaughan_et_al._1979 "streptococcus casseliflavus" vaughan et al. 1979]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3N4T OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3N4T FirstGlance]. <br>
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<table><tr><td colspan='2'>[[3n4t]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Enterococcus_casseliflavus Enterococcus casseliflavus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3N4T OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3N4T FirstGlance]. <br>
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</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3n4u|3n4u]], [[3n4v|3n4v]]</td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">aph(2'')-Id ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=37734 "Streptococcus casseliflavus" Vaughan et al. 1979])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3n4t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3n4t OCA], [https://pdbe.org/3n4t PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3n4t RCSB], [https://www.ebi.ac.uk/pdbsum/3n4t PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3n4t ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3n4t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3n4t OCA], [http://pdbe.org/3n4t PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3n4t RCSB], [http://www.ebi.ac.uk/pdbsum/3n4t PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3n4t ProSAT]</span></td></tr>
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</table>
</table>
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== Function ==
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[https://www.uniprot.org/uniprot/O68183_ENTCA O68183_ENTCA]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3n4t ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3n4t ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
 
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== Publication Abstract from PubMed ==
 
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Acquired resistance to aminoglycoside antibiotics primarily results from deactivation by three families of aminoglycoside-modifying enzymes. Here we report the kinetic mechanism and structure of the aminoglycoside phosphotransferase 2"-IVa (APH(2")-IVa), an enzyme responsible for resistance to aminoglycoside antibiotics in clinical enterococcal and staphylococcal isolates. The enzyme operates via a Bi Bi sequential mechanism in which the two substrates (ATP or GTP and an aminoglycoside) bind in a random manner. The APH(2")-IVa enzyme phosphorylates various 4,6-disubstituted aminoglycoside antibiotics with catalytic efficiencies (k(cat)/K(m)) of 1.5 x 10(3) to 1.2 x 10(6) (M(-1) s(-1)). The enzyme uses both ATP and GTP as the phosphate source, an extremely rare occurrence in the phosphotransferase and protein kinase enzymes. Based upon an analysis of the APH(2")-IVa structure, two overlapping binding templates specifically tuned for hydrogen bonding to either ATP or GTP have been identified and described. A detailed understanding of the structure and mechanism of the GTP-utilizing phosphotransferases is crucial for the development of either novel aminoglycosides or, more importantly, GTP-based enzyme inhibitors which would not be expected to interfere with crucial ATP-dependent enzymes.
 
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Crystal structure and kinetic mechanism of aminoglycoside phosphotransferase-2''-IVa.,Toth M, Frase H, Antunes NT, Smith CA, Vakulenko SB Protein Sci. 2010 Jun 15. PMID:20556826<ref>PMID:20556826</ref>
 
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
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</div>
 
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<div class="pdbe-citations 3n4t" style="background-color:#fffaf0;"></div>
 
==See Also==
==See Also==
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*[[Phosphotransferase|Phosphotransferase]]
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*[[Phosphotransferase 3D structures|Phosphotransferase 3D structures]]
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== References ==
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<references/>
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Streptococcus casseliflavus vaughan et al. 1979]]
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[[Category: Enterococcus casseliflavus]]
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[[Category: Frase, H]]
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[[Category: Large Structures]]
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[[Category: Smith, C A]]
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[[Category: Frase H]]
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[[Category: Toth, M]]
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[[Category: Smith CA]]
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[[Category: Vakulenko, S B]]
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[[Category: Toth M]]
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[[Category: Aminoglycoside]]
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[[Category: Vakulenko SB]]
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[[Category: Phosphotransferase]]
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[[Category: Resistance]]
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[[Category: Unknown function]]
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Current revision

apo APH(2")-IVa form I

PDB ID 3n4t

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