3rlb
From Proteopedia
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<StructureSection load='3rlb' size='340' side='right'caption='[[3rlb]], [[Resolution|resolution]] 2.00Å' scene=''> | <StructureSection load='3rlb' size='340' side='right'caption='[[3rlb]], [[Resolution|resolution]] 2.00Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[3rlb]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/ | + | <table><tr><td colspan='2'>[[3rlb]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Lactococcus_lactis_subsp._cremoris_NZ9000 Lactococcus lactis subsp. cremoris NZ9000]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3RLB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3RLB FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BNG:B-NONYLGLUCOSIDE'>BNG</scene>, <scene name='pdbligand=VIB:3-(4-AMINO-2-METHYL-PYRIMIDIN-5-YLMETHYL)-5-(2-HYDROXY-ETHYL)-4-METHYL-THIAZOL-3-IUM'>VIB</scene> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2Å</td></tr> |
| - | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BNG:B-NONYLGLUCOSIDE'>BNG</scene>, <scene name='pdbligand=VIB:3-(4-AMINO-2-METHYL-PYRIMIDIN-5-YLMETHYL)-5-(2-HYDROXY-ETHYL)-4-METHYL-THIAZOL-3-IUM'>VIB</scene></td></tr> | |
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3rlb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3rlb OCA], [https://pdbe.org/3rlb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3rlb RCSB], [https://www.ebi.ac.uk/pdbsum/3rlb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3rlb ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3rlb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3rlb OCA], [https://pdbe.org/3rlb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3rlb RCSB], [https://www.ebi.ac.uk/pdbsum/3rlb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3rlb ProSAT]</span></td></tr> | ||
</table> | </table> | ||
| - | <div style="background-color:#fffaf0;"> | ||
| - | == Publication Abstract from PubMed == | ||
| - | Energy coupling factor (ECF) transporters are used for the uptake of vitamins in Prokarya. They consist of an integral membrane protein that confers substrate specificity (the S-component) and an energizing module that is related to ATP-binding cassette (ABC) transporters. S-components for different substrates often do not share detectable sequence similarity but interact with the same energizing module. Here we present the crystal structure of the thiamine-specific S-component ThiT from Lactococcus lactis at 2.0 A. Extensive protein-substrate interactions explain its high binding affinity for thiamine (K(d) ~10(-10) M). ThiT has a fold similar to that of the riboflavin-specific S-component RibU, with which it shares only 14% sequence identity. Two alanines in a conserved motif (AxxxA) located on the membrane-embedded surface of the S-components mediate the interaction with the energizing module. Based on these findings, we propose a general transport mechanism for ECF transporters. | ||
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| - | The structural basis of modularity in ECF-type ABC transporters.,Erkens GB, Berntsson RP, Fulyani F, Majsnerowska M, Vujicic-Zagar A, Ter Beek J, Poolman B, Slotboom DJ Nat Struct Mol Biol. 2011 Jun 26;18(7):755-60. doi: 10.1038/nsmb.2073. PMID:21706007<ref>PMID:21706007</ref> | ||
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| - | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| - | </div> | ||
| - | <div class="pdbe-citations 3rlb" style="background-color:#fffaf0;"></div> | ||
==See Also== | ==See Also== | ||
*[[ABC transporter 3D structures|ABC transporter 3D structures]] | *[[ABC transporter 3D structures|ABC transporter 3D structures]] | ||
| - | == References == | ||
| - | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: | + | [[Category: Lactococcus lactis subsp. cremoris NZ9000]] |
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
| - | + | [[Category: Berntsson RP-A]] | |
| - | [[Category: Berntsson | + | [[Category: Erkens GB]] |
| - | [[Category: Erkens | + | [[Category: Fulyani F]] |
| - | [[Category: Fulyani | + | [[Category: Majsnerowska M]] |
| - | [[Category: Majsnerowska | + | [[Category: Poolman B]] |
| - | [[Category: Poolman | + | [[Category: Slotboom DJ]] |
| - | [[Category: Slotboom | + | [[Category: Vujicic-Zagar A]] |
| - | [[Category: Vujicic-Zagar | + | [[Category: Ter Beek J]] |
| - | [[Category: | + | |
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Current revision
Crystal structure at 2.0 A of the S-component for thiamin from an ECF-type ABC transporter
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