3rlb

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Current revision (09:43, 1 March 2024) (edit) (undo)
 
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<StructureSection load='3rlb' size='340' side='right'caption='[[3rlb]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
<StructureSection load='3rlb' size='340' side='right'caption='[[3rlb]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[3rlb]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Lacln Lacln]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3RLB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3RLB FirstGlance]. <br>
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<table><tr><td colspan='2'>[[3rlb]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Lactococcus_lactis_subsp._cremoris_NZ9000 Lactococcus lactis subsp. cremoris NZ9000]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3RLB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3RLB FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BNG:B-NONYLGLUCOSIDE'>BNG</scene>, <scene name='pdbligand=VIB:3-(4-AMINO-2-METHYL-PYRIMIDIN-5-YLMETHYL)-5-(2-HYDROXY-ETHYL)-4-METHYL-THIAZOL-3-IUM'>VIB</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">LLNZ_01755 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=746361 LACLN])</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BNG:B-NONYLGLUCOSIDE'>BNG</scene>, <scene name='pdbligand=VIB:3-(4-AMINO-2-METHYL-PYRIMIDIN-5-YLMETHYL)-5-(2-HYDROXY-ETHYL)-4-METHYL-THIAZOL-3-IUM'>VIB</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3rlb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3rlb OCA], [https://pdbe.org/3rlb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3rlb RCSB], [https://www.ebi.ac.uk/pdbsum/3rlb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3rlb ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3rlb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3rlb OCA], [https://pdbe.org/3rlb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3rlb RCSB], [https://www.ebi.ac.uk/pdbsum/3rlb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3rlb ProSAT]</span></td></tr>
</table>
</table>
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<div style="background-color:#fffaf0;">
 
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== Publication Abstract from PubMed ==
 
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Energy coupling factor (ECF) transporters are used for the uptake of vitamins in Prokarya. They consist of an integral membrane protein that confers substrate specificity (the S-component) and an energizing module that is related to ATP-binding cassette (ABC) transporters. S-components for different substrates often do not share detectable sequence similarity but interact with the same energizing module. Here we present the crystal structure of the thiamine-specific S-component ThiT from Lactococcus lactis at 2.0 A. Extensive protein-substrate interactions explain its high binding affinity for thiamine (K(d) ~10(-10) M). ThiT has a fold similar to that of the riboflavin-specific S-component RibU, with which it shares only 14% sequence identity. Two alanines in a conserved motif (AxxxA) located on the membrane-embedded surface of the S-components mediate the interaction with the energizing module. Based on these findings, we propose a general transport mechanism for ECF transporters.
 
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The structural basis of modularity in ECF-type ABC transporters.,Erkens GB, Berntsson RP, Fulyani F, Majsnerowska M, Vujicic-Zagar A, Ter Beek J, Poolman B, Slotboom DJ Nat Struct Mol Biol. 2011 Jun 26;18(7):755-60. doi: 10.1038/nsmb.2073. PMID:21706007<ref>PMID:21706007</ref>
 
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
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</div>
 
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<div class="pdbe-citations 3rlb" style="background-color:#fffaf0;"></div>
 
==See Also==
==See Also==
*[[ABC transporter 3D structures|ABC transporter 3D structures]]
*[[ABC transporter 3D structures|ABC transporter 3D structures]]
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== References ==
 
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<references/>
 
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Lacln]]
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[[Category: Lactococcus lactis subsp. cremoris NZ9000]]
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Beek, J ter]]
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[[Category: Berntsson RP-A]]
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[[Category: Berntsson, R P.A]]
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[[Category: Erkens GB]]
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[[Category: Erkens, G B]]
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[[Category: Fulyani F]]
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[[Category: Fulyani, F]]
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[[Category: Majsnerowska M]]
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[[Category: Majsnerowska, M]]
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[[Category: Poolman B]]
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[[Category: Poolman, B]]
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[[Category: Slotboom DJ]]
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[[Category: Slotboom, D J]]
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[[Category: Vujicic-Zagar A]]
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[[Category: Vujicic-Zagar, A]]
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[[Category: Ter Beek J]]
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[[Category: Abc transporter]]
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[[Category: Ecf transporter]]
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[[Category: Membrane]]
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[[Category: S-component]]
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[[Category: Substrate-binding domain]]
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[[Category: Thiamine-binding protein]]
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Current revision

Crystal structure at 2.0 A of the S-component for thiamin from an ECF-type ABC transporter

PDB ID 3rlb

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