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3sdt

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Current revision (09:49, 1 March 2024) (edit) (undo)
 
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<StructureSection load='3sdt' size='340' side='right'caption='[[3sdt]], [[Resolution|resolution]] 1.89&Aring;' scene=''>
<StructureSection load='3sdt' size='340' side='right'caption='[[3sdt]], [[Resolution|resolution]] 1.89&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[3sdt]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Abigr Abigr]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3SDT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3SDT FirstGlance]. <br>
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<table><tr><td colspan='2'>[[3sdt]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Abies_grandis Abies grandis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3SDT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3SDT FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AHD:4-AMINO-1-HYDROXYBUTANE-1,1-DIYLDIPHOSPHONATE'>AHD</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.89&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3sae|3sae]], [[3sdq|3sdq]], [[3sdr|3sdr]], [[3sdu|3sdu]], [[3sdv|3sdv]]</div></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AHD:4-AMINO-1-HYDROXYBUTANE-1,1-DIYLDIPHOSPHONATE'>AHD</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ag1 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=46611 ABIGR])</td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Alpha-bisabolene_synthase Alpha-bisabolene synthase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.3.38 4.2.3.38] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3sdt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3sdt OCA], [https://pdbe.org/3sdt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3sdt RCSB], [https://www.ebi.ac.uk/pdbsum/3sdt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3sdt ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3sdt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3sdt OCA], [https://pdbe.org/3sdt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3sdt RCSB], [https://www.ebi.ac.uk/pdbsum/3sdt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3sdt ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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[[https://www.uniprot.org/uniprot/TPSD1_ABIGR TPSD1_ABIGR]] Involved in defensive oleoresin formation in conifers in response to insect attack or other injury. Involved in sesquiterpene (C15) olefins biosynthesis.<ref>PMID:9539701</ref>
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[https://www.uniprot.org/uniprot/TPSD1_ABIGR TPSD1_ABIGR] Involved in defensive oleoresin formation in conifers in response to insect attack or other injury. Involved in sesquiterpene (C15) olefins biosynthesis.<ref>PMID:9539701</ref>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The sesquiterpene bisabolene was recently identified as a biosynthetic precursor to bisabolane, an advanced biofuel with physicochemical properties similar to those of D2 diesel. High-titer microbial bisabolene production was achieved using Abies grandis alpha-bisabolene synthase (AgBIS). Here, we report the structure of AgBIS, a three-domain plant sesquiterpene synthase, crystallized in its apo form and bound to five different inhibitors. Structural and biochemical characterization of the AgBIS terpene synthase Class I active site leads us to propose a catalytic mechanism for the cyclization of farnesyl diphosphate into bisabolene via a bisabolyl cation intermediate. Further, we describe the nonfunctional AgBIS Class II active site whose high similarity to bifunctional diterpene synthases makes it an important link in understanding terpene synthase evolution. Practically, the AgBIS crystal structure is important in future protein engineering efforts to increase the microbial production of bisabolene.
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Structure of a three-domain sesquiterpene synthase: a prospective target for advanced biofuels production.,McAndrew RP, Peralta-Yahya PP, DeGiovanni A, Pereira JH, Hadi MZ, Keasling JD, Adams PD Structure. 2011 Dec 7;19(12):1876-84. PMID:22153510<ref>PMID:22153510</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 3sdt" style="background-color:#fffaf0;"></div>
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== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Abigr]]
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[[Category: Abies grandis]]
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[[Category: Alpha-bisabolene synthase]]
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[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Adams, P D]]
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[[Category: Adams PD]]
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[[Category: DeGiovanni, A]]
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[[Category: DeGiovanni A]]
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[[Category: Hadi, M Z]]
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[[Category: Hadi MZ]]
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[[Category: Keasling, J D]]
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[[Category: Keasling JD]]
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[[Category: McAndrew, R P]]
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[[Category: McAndrew RP]]
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[[Category: Peralta-Yahya, P P]]
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[[Category: Peralta-Yahya PP]]
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[[Category: Pereira, J H]]
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[[Category: Pereira JH]]
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[[Category: Lyase]]
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[[Category: Terpene synthase]]
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Current revision

Structure of a three-domain sesquiterpene synthase: a prospective target for advanced biofuels production

PDB ID 3sdt

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