3t3t

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<StructureSection load='3t3t' size='340' side='right'caption='[[3t3t]], [[Resolution|resolution]] 1.38&Aring;' scene=''>
<StructureSection load='3t3t' size='340' side='right'caption='[[3t3t]], [[Resolution|resolution]] 1.38&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[3t3t]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3T3T OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3T3T FirstGlance]. <br>
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<table><tr><td colspan='2'>[[3t3t]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3T3T OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3T3T FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.38&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3t3j|3t3j]], [[3t3k|3t3k]], [[3t3l|3t3l]], [[3t3x|3t3x]]</div></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">FXN, FRDA, X25 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Ferroxidase Ferroxidase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.16.3.1 1.16.3.1] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3t3t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3t3t OCA], [https://pdbe.org/3t3t PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3t3t RCSB], [https://www.ebi.ac.uk/pdbsum/3t3t PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3t3t ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3t3t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3t3t OCA], [https://pdbe.org/3t3t PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3t3t RCSB], [https://www.ebi.ac.uk/pdbsum/3t3t PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3t3t ProSAT]</span></td></tr>
</table>
</table>
== Disease ==
== Disease ==
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[[https://www.uniprot.org/uniprot/FRDA_HUMAN FRDA_HUMAN]] Defects in FXN are the cause of Friedreich ataxia (FRDA) [MIM:[https://omim.org/entry/229300 229300]]. FRDA is an autosomal recessive, progressive degenerative disease characterized by neurodegeneration and cardiomyopathy it is the most common inherited ataxia. The disorder is usually manifest before adolescence and is generally characterized by incoordination of limb movements, dysarthria, nystagmus, diminished or absent tendon reflexes, Babinski sign, impairment of position and vibratory senses, scoliosis, pes cavus, and hammer toe. In most patients, FRDA is due to GAA triplet repeat expansions in the first intron of the frataxin gene. But in some cases the disease is due to mutations in the coding region.[:][:]<ref>PMID:9150176</ref> <ref>PMID:9779809</ref> <ref>PMID:10732799</ref> <ref>PMID:9989622</ref> [:]<ref>PMID:10874325</ref> <ref>PMID:19629184</ref>
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[https://www.uniprot.org/uniprot/FRDA_HUMAN FRDA_HUMAN] Defects in FXN are the cause of Friedreich ataxia (FRDA) [MIM:[https://omim.org/entry/229300 229300]. FRDA is an autosomal recessive, progressive degenerative disease characterized by neurodegeneration and cardiomyopathy it is the most common inherited ataxia. The disorder is usually manifest before adolescence and is generally characterized by incoordination of limb movements, dysarthria, nystagmus, diminished or absent tendon reflexes, Babinski sign, impairment of position and vibratory senses, scoliosis, pes cavus, and hammer toe. In most patients, FRDA is due to GAA triplet repeat expansions in the first intron of the frataxin gene. But in some cases the disease is due to mutations in the coding region.[:][:]<ref>PMID:9150176</ref> <ref>PMID:9779809</ref> <ref>PMID:10732799</ref> <ref>PMID:9989622</ref> [:]<ref>PMID:10874325</ref> <ref>PMID:19629184</ref>
== Function ==
== Function ==
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[[https://www.uniprot.org/uniprot/FRDA_HUMAN FRDA_HUMAN]] Promotes the biosynthesis of heme and assembly and repair of iron-sulfur clusters by delivering Fe(2+) to proteins involved in these pathways. May play a role in the protection against iron-catalyzed oxidative stress through its ability to catalyze the oxidation of Fe(2+) to Fe(3+); the oligomeric form but not the monomeric form has in vitro ferroxidase activity. May be able to store large amounts of iron in the form of a ferrihydrite mineral by oligomerization; however, the physiological relevance is unsure as reports are conflicting and the function has only been shown using heterologous overexpression systems. Modulates the RNA-binding activity of ACO1.<ref>PMID:20053667</ref> <ref>PMID:11823441</ref> <ref>PMID:12755598</ref> <ref>PMID:12785837</ref> <ref>PMID:15123683</ref> <ref>PMID:15247478</ref> <ref>PMID:15641778</ref> <ref>PMID:16239244</ref> <ref>PMID:16608849</ref>
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[https://www.uniprot.org/uniprot/FRDA_HUMAN FRDA_HUMAN] Promotes the biosynthesis of heme and assembly and repair of iron-sulfur clusters by delivering Fe(2+) to proteins involved in these pathways. May play a role in the protection against iron-catalyzed oxidative stress through its ability to catalyze the oxidation of Fe(2+) to Fe(3+); the oligomeric form but not the monomeric form has in vitro ferroxidase activity. May be able to store large amounts of iron in the form of a ferrihydrite mineral by oligomerization; however, the physiological relevance is unsure as reports are conflicting and the function has only been shown using heterologous overexpression systems. Modulates the RNA-binding activity of ACO1.<ref>PMID:20053667</ref> <ref>PMID:11823441</ref> <ref>PMID:12755598</ref> <ref>PMID:12785837</ref> <ref>PMID:15123683</ref> <ref>PMID:15247478</ref> <ref>PMID:15641778</ref> <ref>PMID:16239244</ref> <ref>PMID:16608849</ref>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Friedreich's ataxia (FRDA) is a progressive neurodegenerative disease associated with the loss of function of the protein frataxin (FXN) that results from low FXN levels due to a GAA triplet repeat expansion or, occasionally, from missense mutations in the FXN gene. Here biochemical and structural properties of FXN variants, including three FRDA missense mutations (N146K, Q148R, and R165C) and three related mutants (N146A, Q148G, and Q153A), were determined in an effort to understand the structural basis for the loss of function. In vitro assays revealed that although the three FRDA missense mutations exhibited similar losses of cysteine desulfurase and Fe-S cluster assembly activities, the causes for these activation defects were distinct. The R165C variant exhibited a k(cat)/K(M) higher than that of native FXN but weak binding to the NFS1, ISD11, and ISCU2 (SDU) complex, whereas the Q148R variant exhibited the lowest k(cat)/K(M) of the six tested FXN variants and only a modest binding deficiency. The order of the FXN binding affinities for the SDU Fe-S assembly complex was as follows: FXN &gt; Q148R &gt; N146A &gt; Q148G &gt; N146K &gt; Q153A &gt; R165C. Four different classes of FXN variants were identified on the basis of their biochemical properties. Together, these structure-function studies reveal determinants for the binding and allosteric activation of the Fe-S assembly complex and provide insight into how FRDA missense mutations are functionally compromised.
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Structure-Function Analysis of Friedreich's Ataxia Mutants Reveals Determinants of Frataxin Binding and Activation of the Fe-S Assembly Complex.,Bridwell-Rabb J, Winn AM, Barondeau DP Biochemistry. 2011 Aug 2. PMID:21776984<ref>PMID:21776984</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 3t3t" style="background-color:#fffaf0;"></div>
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==See Also==
==See Also==
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Ferroxidase]]
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[[Category: Homo sapiens]]
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[[Category: Human]]
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[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Barondeau, D P]]
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[[Category: Barondeau DP]]
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[[Category: Bridwell-Rabb, J]]
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[[Category: Bridwell-Rabb J]]
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[[Category: Winn, A M]]
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[[Category: Winn AM]]
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[[Category: Fe-s cluster biosynthesis]]
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[[Category: Human mitochondria]]
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[[Category: Oxidoreductase]]
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Current revision

1.38 A structure of human frataxin variant Q148G

PDB ID 3t3t

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