3tfd

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Current revision (10:08, 1 March 2024) (edit) (undo)
 
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<StructureSection load='3tfd' size='340' side='right'caption='[[3tfd]], [[Resolution|resolution]] 1.96&Aring;' scene=''>
<StructureSection load='3tfd' size='340' side='right'caption='[[3tfd]], [[Resolution|resolution]] 1.96&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[3tfd]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Anabaena_7120 Anabaena 7120]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3TFD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3TFD FirstGlance]. <br>
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<table><tr><td colspan='2'>[[3tfd]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Nostoc_sp._PCC_7120_=_FACHB-418 Nostoc sp. PCC 7120 = FACHB-418]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3TFD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3TFD FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=MLA:MALONIC+ACID'>MLA</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.96&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2o09|2o09]], [[2o0c|2o0c]], [[2o0g|2o0g]], [[3tf0|3tf0]], [[3tf1|3tf1]], [[3tf8|3tf8]], [[3tf9|3tf9]], [[3tfa|3tfa]], [[3tfe|3tfe]], [[3tff|3tff]], [[3tfg|3tfg]]</div></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=MLA:MALONIC+ACID'>MLA</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">alr2278 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=103690 Anabaena 7120])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3tfd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3tfd OCA], [https://pdbe.org/3tfd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3tfd RCSB], [https://www.ebi.ac.uk/pdbsum/3tfd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3tfd ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3tfd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3tfd OCA], [https://pdbe.org/3tfd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3tfd RCSB], [https://www.ebi.ac.uk/pdbsum/3tfd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3tfd ProSAT]</span></td></tr>
</table>
</table>
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<div style="background-color:#fffaf0;">
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== Function ==
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== Publication Abstract from PubMed ==
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[https://www.uniprot.org/uniprot/Q8YUQ7_NOSS1 Q8YUQ7_NOSS1]
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Interior topological features, such as pockets and channels, have evolved in proteins to regulate biological functions by facilitating the diffusion of biomolecules. Decades of research using the globins as model heme proteins have clearly highlighted the importance of gas pockets around the heme in controlling the capture and release of O(2). However, much less is known about how ligand migration contributes to the diverse functions of other heme protein scaffolds. Heme nitric oxide/oxygen binding (H-NOX) domains are a conserved family of gas-sensing heme proteins with a divergent fold that are critical to numerous signaling pathways. Utilizing X-ray crystallography with xenon, a tunnel network has been shown to serve as a molecular pathway for ligand diffusion. Structure-guided mutagenesis results show that the tunnels have unexpected effects on gas-sensing properties in H-NOX domains. The findings provide insights on how the flux of biomolecules through protein scaffolds modulates protein chemistry.
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Tunnels modulate ligand flux in a heme nitric oxide/oxygen binding (H-NOX) domain.,Winter MB, Herzik MA Jr, Kuriyan J, Marletta MA Proc Natl Acad Sci U S A. 2011 Oct 25;108(43):E881-9. Epub 2011 Oct 12. PMID:21997213<ref>PMID:21997213</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 3tfd" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Anabaena 7120]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Herzik, M A]]
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[[Category: Nostoc sp. PCC 7120 = FACHB-418]]
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[[Category: Kuriyan, J]]
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[[Category: Herzik Jr MA]]
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[[Category: Marletta, M A]]
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[[Category: Kuriyan J]]
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[[Category: Winter, M B]]
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[[Category: Marletta MA]]
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[[Category: Gas binding]]
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[[Category: Winter MB]]
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[[Category: Heme-based sensor domain]]
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[[Category: Signaling protein]]
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Current revision

Crystal structure of an H-NOX protein from Nostoc sp. PCC 7120, L66W mutant

PDB ID 3tfd

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