3ubc

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Current revision (10:19, 1 March 2024) (edit) (undo)
 
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<StructureSection load='3ubc' size='340' side='right'caption='[[3ubc]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
<StructureSection load='3ubc' size='340' side='right'caption='[[3ubc]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[3ubc]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Meti4 Meti4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3UBC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3UBC FirstGlance]. <br>
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<table><tr><td colspan='2'>[[3ubc]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Methylacidiphilum_infernorum_V4 Methylacidiphilum infernorum V4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3UBC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3UBC FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=OXY:OXYGEN+MOLECULE'>OXY</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.65&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3ubv|3ubv]]</div></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=OXY:OXYGEN+MOLECULE'>OXY</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">hmp, Minf_1095 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=481448 METI4])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ubc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ubc OCA], [https://pdbe.org/3ubc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ubc RCSB], [https://www.ebi.ac.uk/pdbsum/3ubc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ubc ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ubc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ubc OCA], [https://pdbe.org/3ubc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ubc RCSB], [https://www.ebi.ac.uk/pdbsum/3ubc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ubc ProSAT]</span></td></tr>
</table>
</table>
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<div style="background-color:#fffaf0;">
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== Function ==
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== Publication Abstract from PubMed ==
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[https://www.uniprot.org/uniprot/B3DUZ7_METI4 B3DUZ7_METI4]
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X-ray atomic structure of recombinant Hell's gate globin I (HGbI) from Methylacidophilum infernorum was calculated from the X-ray diffraction data of two different types of crystals: obtained by classical hanging drop and by LB nanotemplate method under the same crystallization conditions. After the accurate comparison of crystallographic parameters and electron density maps of two structures they appears to be quite similar, while the quality of the crystals grown by LB nanotemplate method was higher then of those grown by classical method. Indeed, the resolution of the LB crystal structure was 1.65 A, while classical crystals showed only 3.2 A resolution. Moreover, the reproducibility of this result in the case of LB crystals was much better - nine crystals from ten gave the same structural results, while only two of ten classical crystals were appropriate for the X ray structure resolution. J. Cell. Biochem. (c) 2012 Wiley Periodicals, Inc.
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Oxygen-bound Hell's gate globin I by classical versus LB nanotemplate method.,Pechkova E, Scudieri D, Belmonte L, Nicolini C J Cell Biochem. 2012 Mar 13. doi: 10.1002/jcb.24131. PMID:22415930<ref>PMID:22415930</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 3ubc" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Meti4]]
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[[Category: Methylacidiphilum infernorum V4]]
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[[Category: Belmonte, L]]
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[[Category: Belmonte L]]
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[[Category: Nicolini, C]]
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[[Category: Nicolini C]]
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[[Category: Pechkova, E]]
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[[Category: Pechkova E]]
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[[Category: Scudieri, D]]
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[[Category: Scudieri D]]
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[[Category: Autoxidation]]
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[[Category: Langmuir-blodgett]]
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[[Category: Nanotemplate]]
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[[Category: Oxygen transport]]
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[[Category: Oxygen-bound]]
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[[Category: Thin film]]
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Current revision

Oxygen-bound hell's gate globin I by LB nanotemplate method

PDB ID 3ubc

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