3udg

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<StructureSection load='3udg' size='340' side='right'caption='[[3udg]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
<StructureSection load='3udg' size='340' side='right'caption='[[3udg]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[3udg]] is a 9 chain structure with sequence from [https://en.wikipedia.org/wiki/Deira Deira]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3UDG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3UDG FirstGlance]. <br>
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<table><tr><td colspan='2'>[[3udg]] is a 9 chain structure with sequence from [https://en.wikipedia.org/wiki/Deinococcus_radiodurans_R1 Deinococcus radiodurans R1] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3UDG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3UDG FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=TMP:THYMIDINE-5-PHOSPHATE'>TMP</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">DR_0099, ssb ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=243230 DEIRA])</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=TMP:THYMIDINE-5-PHOSPHATE'>TMP</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3udg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3udg OCA], [https://pdbe.org/3udg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3udg RCSB], [https://www.ebi.ac.uk/pdbsum/3udg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3udg ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3udg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3udg OCA], [https://pdbe.org/3udg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3udg RCSB], [https://www.ebi.ac.uk/pdbsum/3udg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3udg ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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[[https://www.uniprot.org/uniprot/SSB_DEIRA SSB_DEIRA]] This protein is essential for replication of the chromosome. It is also involved in DNA recombination and repair (By similarity).
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[https://www.uniprot.org/uniprot/SSB_DEIRA SSB_DEIRA] This protein is essential for replication of the chromosome. It is also involved in DNA recombination and repair (By similarity).
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The single-strand (ss) DNA-binding protein from the radiation-resistant bacterium Deinococcus radiodurans (DrSSB) functions as a homodimer in which each monomer contains two oligonucleotide-binding (OB) domains. This arrangement is exceedingly rare among bacterial SSBs, which typically form homotetramers of single-OB-domain subunits. To better understand how this unusual structure influences the DNA binding and biological functions of DrSSB in D. radiodurans radiation resistance, we have examined the structure of DrSSB in complex with ssDNA and the DNA-damage-dependent cellular dynamics of DrSSB. The X-ray crystal structure of the DrSSB/ssDNA complex shows that ssDNA binds to surfaces of DrSSB that are analogous to those mapped in homotetrameric SSBs, although there are distinct contacts in DrSSB that mediate species-specific ssDNA binding. Observations by electron microscopy reveal two salt-dependent ssDNA-binding modes for DrSSB that strongly resemble those of the homotetrameric Escherichia coli SSB, further supporting a shared overall DNA binding mechanism between the two classes of bacterial SSBs. In vivo, DrSSB levels are heavily induced following exposure to ionizing radiation. This accumulation is accompanied by dramatic time-dependent DrSSB cellular dynamics in which a single nucleoid-centric focus of DrSSB is observed within an hour of irradiation but is dispersed by three hours after irradiation. These kinetics parallel those of D. radiodurans post-irradiation genome reconstitution, suggesting that DrSSB dynamics could play important organizational roles in DNA repair.
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Structure and cellular dynamics of Deinococcus radiodurans SSB/DNA complexes.,George NP, Ngo KV, Chitteni-Pattu S, Norais CA, Battista JR, Cox MM, Keck JL J Biol Chem. 2012 May 7. PMID:22570477<ref>PMID:22570477</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 3udg" style="background-color:#fffaf0;"></div>
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==See Also==
==See Also==
*[[Single-stranded DNA-binding protein 3D structures|Single-stranded DNA-binding protein 3D structures]]
*[[Single-stranded DNA-binding protein 3D structures|Single-stranded DNA-binding protein 3D structures]]
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== References ==
 
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<references/>
 
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Deira]]
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[[Category: Deinococcus radiodurans R1]]
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Battista, J R]]
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[[Category: Synthetic construct]]
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[[Category: Chitteni-Patu, S]]
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[[Category: Battista JR]]
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[[Category: Cox, M M]]
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[[Category: Chitteni-Patu S]]
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[[Category: George, N P]]
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[[Category: Cox MM]]
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[[Category: Keck, J L]]
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[[Category: George NP]]
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[[Category: Ngo, K V]]
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[[Category: Keck JL]]
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[[Category: Norais, C A]]
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[[Category: Ngo KV]]
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[[Category: Beta-barrel]]
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[[Category: Norais CA]]
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[[Category: Dna binding protein-dna complex]]
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[[Category: Ob fold]]
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[[Category: Single-stranded dna-binding]]
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[[Category: Ssb]]
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Current revision

Structure of Deinococcus radiodurans SSB bound to ssDNA

PDB ID 3udg

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Proteopedia Page Contributors and Editors (what is this?)

OCA

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