413d
From Proteopedia
(Difference between revisions)
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== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[413d]] is a 1 chain structure. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=373d 373d]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=413D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=413D FirstGlance]. <br> | <table><tr><td colspan='2'>[[413d]] is a 1 chain structure. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=373d 373d]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=413D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=413D FirstGlance]. <br> | ||
| - | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=413d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=413d OCA], [https://pdbe.org/413d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=413d RCSB], [https://www.ebi.ac.uk/pdbsum/413d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=413d ProSAT]</span></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8Å</td></tr> |
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=413d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=413d OCA], [https://pdbe.org/413d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=413d RCSB], [https://www.ebi.ac.uk/pdbsum/413d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=413d ProSAT]</span></td></tr> | ||
</table> | </table> | ||
| - | <div style="background-color:#fffaf0;"> | ||
| - | == Publication Abstract from PubMed == | ||
| - | Here we demonstrate the presence of the A'-RNA conformation using the single crystal structure of a tridecamer: r(UGAGCUUCGGCUC). The average A'-RNA conformation deduced from X-ray fiber diffraction data had only been available previously, but now the presence of the A'-RNA conformation has been found in a single crystal structure for the first time. Statistical analysis showed that the A'-RNA conformation is distinguishable from the A-RNA conformation in a plot of the major groove width against the base pair inclination angle. The major groove of the A'-RNA conformation is wide enough to accommodate a protein or peptide while that of the A-RNA conformation is too narrow to do so. The presence of the A'-RNA conformation is significant for protein-RNA interaction. | ||
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| - | A'-form RNA double helix in the single crystal structure of r(UGAGCUUCGGCUC).,Tanaka Y, Fujii S, Hiroaki H, Sakata T, Tanaka T, Uesugi S, Tomita K, Kyogoku Y Nucleic Acids Res. 1999 Feb 15;27(4):949-55. PMID:9927725<ref>PMID:9927725</ref> | ||
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| - | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| - | </div> | ||
| - | <div class="pdbe-citations 413d" style="background-color:#fffaf0;"></div> | ||
| - | == References == | ||
| - | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
| - | [[Category: Fujii | + | [[Category: Fujii S]] |
| - | [[Category: Hiroaki | + | [[Category: Hiroaki H]] |
| - | [[Category: Kyogoku | + | [[Category: Kyogoku Y]] |
| - | [[Category: Sakata | + | [[Category: Sakata T]] |
| - | [[Category: Tanaka | + | [[Category: Tanaka T]] |
| - | [[Category: Tanaka | + | [[Category: Tanaka Y]] |
| - | [[Category: Tomita | + | [[Category: Tomita K-I]] |
| - | [[Category: Uesugi | + | [[Category: Uesugi S]] |
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Current revision
A'-FORM RNA DOUBLE HELIX IN THE SINGLE CRYSTAL STRUCTURE OF R(UGAGCUUCGGCUC)
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Categories: Large Structures | Fujii S | Hiroaki H | Kyogoku Y | Sakata T | Tanaka T | Tanaka Y | Tomita K-I | Uesugi S
