5tk9

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (14:20, 6 March 2024) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='5tk9' size='340' side='right'caption='[[5tk9]], [[Resolution|resolution]] 1.84&Aring;' scene=''>
<StructureSection load='5tk9' size='340' side='right'caption='[[5tk9]], [[Resolution|resolution]] 1.84&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5tk9]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_14581 Atcc 14581]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5TK9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5TK9 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5tk9]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Priestia_megaterium Priestia megaterium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5TK9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5TK9 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=7D7:[(2S,3R,4R)-4-(6-AMINO-9H-PURIN-9-YL)OXETANE-2,3-DIYL]DIMETHANOL'>7D7</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.843&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5tk6|5tk6]], [[5tk7|5tk7]], [[5tk8|5tk8]], [[5tka|5tka]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=7D7:[(2S,3R,4R)-4-(6-AMINO-9H-PURIN-9-YL)OXETANE-2,3-DIYL]DIMETHANOL'>7D7</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">oxsA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1404 ATCC 14581])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5tk9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5tk9 OCA], [https://pdbe.org/5tk9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5tk9 RCSB], [https://www.ebi.ac.uk/pdbsum/5tk9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5tk9 ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5tk9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5tk9 OCA], [http://pdbe.org/5tk9 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5tk9 RCSB], [http://www.ebi.ac.uk/pdbsum/5tk9 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5tk9 ProSAT]</span></td></tr>
+
</table>
</table>
-
<div style="background-color:#fffaf0;">
+
== Function ==
-
== Publication Abstract from PubMed ==
+
[https://www.uniprot.org/uniprot/O24769_PRIMG O24769_PRIMG]
-
HD domain phosphohydrolase enzymes are characterized by a conserved set of histidine and aspartate residues that coordinate an active site metallocenter. Despite the important roles these enzymes play in nucleotide metabolism and signal transduction, few have been both biochemically and structurally characterized. Here, we present X-ray crystal structures and biochemical characterization of the Bacillus megaterium HD domain phosphohydrolase OxsA, involved in the biosynthesis of the antitumor, antiviral, and antibacterial compound oxetanocin-A. These studies reveal a previously uncharacterized reaction for this family; OxsA catalyzes the conversion of a triphosphorylated compound into a nucleoside, releasing one molecule of inorganic phosphate at a time. Remarkably, this functionality is a result of the OxsA active site, which based on structural and kinetic analyses has been tailored to bind the small, four-membered ring of oxetanocin-A over larger substrates. Furthermore, our OxsA structures show an active site that switches from a dinuclear to a mononuclear metal center as phosphates are eliminated from substrate.
+
-
 
+
-
An HD domain phosphohydrolase active site tailored for oxetanocin-A biosynthesis.,Bridwell-Rabb J, Kang G, Zhong A, Liu HW, Drennan CL Proc Natl Acad Sci U S A. 2016 Nov 29;113(48):13750-13755. Epub 2016 Nov 14. PMID:27849620<ref>PMID:27849620</ref>
+
-
 
+
-
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+
-
</div>
+
-
<div class="pdbe-citations 5tk9" style="background-color:#fffaf0;"></div>
+
-
== References ==
+
-
<references/>
+
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Atcc 14581]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Bridwell-Rabb, J]]
+
[[Category: Priestia megaterium]]
-
[[Category: Drennan, C L]]
+
[[Category: Bridwell-Rabb J]]
-
[[Category: Metal binding protein]]
+
[[Category: Drennan CL]]
-
[[Category: Metalloprotein]]
+

Current revision

Structure of the HD-domain phosphohydrolase OxsA with Oxetanocin-A bound

PDB ID 5tk9

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5tk9"
Personal tools