5ufo

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Current revision (14:26, 6 March 2024) (edit) (undo)
 
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<StructureSection load='5ufo' size='340' side='right'caption='[[5ufo]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
<StructureSection load='5ufo' size='340' side='right'caption='[[5ufo]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[5ufo]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5UFO OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5UFO FirstGlance]. <br>
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<table><tr><td colspan='2'>[[5ufo]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5UFO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5UFO FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=87J:(S)-{4-CHLORO-2-METHOXY-3-[4-(METHYLSULFONYL)PHENYL]QUINOLIN-6-YL}(1-METHYL-1H-IMIDAZOL-5-YL)[6-(TRIFLUOROMETHYL)PYRIDIN-3-YL]METHANOL'>87J</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.802&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5ufr|5ufr]]</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=87J:(S)-{4-CHLORO-2-METHOXY-3-[4-(METHYLSULFONYL)PHENYL]QUINOLIN-6-YL}(1-METHYL-1H-IMIDAZOL-5-YL)[6-(TRIFLUOROMETHYL)PYRIDIN-3-YL]METHANOL'>87J</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5ufo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ufo OCA], [http://pdbe.org/5ufo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5ufo RCSB], [http://www.ebi.ac.uk/pdbsum/5ufo PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5ufo ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5ufo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ufo OCA], [https://pdbe.org/5ufo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5ufo RCSB], [https://www.ebi.ac.uk/pdbsum/5ufo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5ufo ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/RORG_HUMAN RORG_HUMAN]] Possible nuclear receptor for hydroxycholesterols, the binding of which strongly promotes coactivators recruitment. Essential for thymopoiesis and the development of several secondary lymphoid tissues, including lymph nodes. Involved in lineage specification of uncommitted CD4(+) T-helper cells into Th17 cells. Regulate the expression of several components of the circadian clock.
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[https://www.uniprot.org/uniprot/RORG_HUMAN RORG_HUMAN] Possible nuclear receptor for hydroxycholesterols, the binding of which strongly promotes coactivators recruitment. Essential for thymopoiesis and the development of several secondary lymphoid tissues, including lymph nodes. Involved in lineage specification of uncommitted CD4(+) T-helper cells into Th17 cells. Regulate the expression of several components of the circadian clock.
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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A high-throughput screen of the ligand binding domain of the nuclear receptor retinoic acid-related orphan receptor gamma t (RORgammat) employing a thermal shift assay yielded a quinoline tertiary alcohol hit. Optimization of the 2-, 3- and 4-positions of the quinoline core using structure-activity relationships and structure-based drug design methods led to the discovery of a series of modulators with improved RORgammat inhibitory potency and inverse agonism properties.
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Identification and structure activity relationships of quinoline tertiary alcohol modulators of RORgammat.,Kummer DA, Cummings MD, Abad M, Barbay J, Castro G, Wolin R, Kreutter KD, Maharoof U, Milligan C, Nishimura R, Pierce J, Schalk-Hihi C, Spurlino J, Urbanski M, Venkatesan H, Wang A, Woods C, Xue X, Edwards JP, Fourie AM, Leonard K Bioorg Med Chem Lett. 2017 Feb 21. pii: S0960-894X(17)30163-4. doi:, 10.1016/j.bmcl.2017.02.044. PMID:28318945<ref>PMID:28318945</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 5ufo" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Homo sapiens]]
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Spurlino, J]]
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[[Category: Spurlino J]]
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[[Category: Nuclear hormone receptor]]
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[[Category: Nuclear protein]]
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Current revision

Structure of RORgt bound to

PDB ID 5ufo

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OCA

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