7jl3
From Proteopedia
(Difference between revisions)
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- | ==== | + | ==Cryo-EM structure of RIG-I:dsRNA filament in complex with RIPLET PrySpry domain (trimer)== |
- | <StructureSection load='7jl3' size='340' side='right'caption='[[7jl3]]' scene=''> | + | <StructureSection load='7jl3' size='340' side='right'caption='[[7jl3]], [[Resolution|resolution]] 4.20Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[7jl3]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7JL3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7JL3 FirstGlance]. <br> |
- | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7jl3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7jl3 OCA], [https://pdbe.org/7jl3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7jl3 RCSB], [https://www.ebi.ac.uk/pdbsum/7jl3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7jl3 ProSAT]</span></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 4.2Å</td></tr> |
+ | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=ALF:TETRAFLUOROALUMINATE+ION'>ALF</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7jl3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7jl3 OCA], [https://pdbe.org/7jl3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7jl3 RCSB], [https://www.ebi.ac.uk/pdbsum/7jl3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7jl3 ProSAT]</span></td></tr> | ||
</table> | </table> | ||
+ | == Disease == | ||
+ | [https://www.uniprot.org/uniprot/RN135_HUMAN RN135_HUMAN] Overgrowth-macrocephaly-facial dysmorphism syndrome. | ||
+ | == Function == | ||
+ | [https://www.uniprot.org/uniprot/RN135_HUMAN RN135_HUMAN] E2-dependent E3 ubiquitin-protein ligase that functions as a RIGI coreceptor in the sensing of viral RNAs in cell cytoplasm and the activation of the antiviral innate immune response (PubMed:19017631, PubMed:19484123, PubMed:21147464, PubMed:23950712, PubMed:28469175, PubMed:31006531). Together with the UBE2D3, UBE2N and UB2V1 E2 ligases, catalyzes the 'Lys-63'-linked polyubiquitination of RIGI oligomerized on viral RNAs, an essential step in the activation of the RIG-I signaling pathway (PubMed:19017631, PubMed:21147464, PubMed:28469175, PubMed:31006531). Through a ubiquitin-independent parallel mechanism, which consists in bridging RIGI filaments forming on longer viral RNAs, further activates the RIG-I signaling pathway (PubMed:31006531). This second mechanism that synergizes with the ubiquitin-dependent one would thereby allow an RNA length-dependent regulation of the RIG-I signaling pathway (Probable). Associated with the E2 ligase UBE2N, also constitutively synthesizes unanchored 'Lys-63'-linked polyubiquitin chains that may also activate the RIG-I signaling pathway (PubMed:28469175, PubMed:31006531).<ref>PMID:19017631</ref> <ref>PMID:19484123</ref> <ref>PMID:21147464</ref> <ref>PMID:23950712</ref> <ref>PMID:28469175</ref> <ref>PMID:31006531</ref> <ref>PMID:31006531</ref> | ||
+ | |||
+ | ==See Also== | ||
+ | *[[Ubiquitin protein ligase 3D structures|Ubiquitin protein ligase 3D structures]] | ||
+ | == References == | ||
+ | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
+ | [[Category: Homo sapiens]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
- | [[Category: | + | [[Category: Ahmad S]] |
+ | [[Category: Hur S]] | ||
+ | [[Category: Kato K]] |
Current revision
Cryo-EM structure of RIG-I:dsRNA filament in complex with RIPLET PrySpry domain (trimer)
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Categories: Homo sapiens | Large Structures | Ahmad S | Hur S | Kato K