7jl3

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Current revision (14:52, 6 March 2024) (edit) (undo)
 
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====
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==Cryo-EM structure of RIG-I:dsRNA filament in complex with RIPLET PrySpry domain (trimer)==
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<StructureSection load='7jl3' size='340' side='right'caption='[[7jl3]]' scene=''>
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<StructureSection load='7jl3' size='340' side='right'caption='[[7jl3]], [[Resolution|resolution]] 4.20&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>
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<table><tr><td colspan='2'>[[7jl3]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7JL3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7JL3 FirstGlance]. <br>
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</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7jl3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7jl3 OCA], [https://pdbe.org/7jl3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7jl3 RCSB], [https://www.ebi.ac.uk/pdbsum/7jl3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7jl3 ProSAT]</span></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 4.2&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=ALF:TETRAFLUOROALUMINATE+ION'>ALF</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7jl3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7jl3 OCA], [https://pdbe.org/7jl3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7jl3 RCSB], [https://www.ebi.ac.uk/pdbsum/7jl3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7jl3 ProSAT]</span></td></tr>
</table>
</table>
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== Disease ==
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[https://www.uniprot.org/uniprot/RN135_HUMAN RN135_HUMAN] Overgrowth-macrocephaly-facial dysmorphism syndrome.
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== Function ==
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[https://www.uniprot.org/uniprot/RN135_HUMAN RN135_HUMAN] E2-dependent E3 ubiquitin-protein ligase that functions as a RIGI coreceptor in the sensing of viral RNAs in cell cytoplasm and the activation of the antiviral innate immune response (PubMed:19017631, PubMed:19484123, PubMed:21147464, PubMed:23950712, PubMed:28469175, PubMed:31006531). Together with the UBE2D3, UBE2N and UB2V1 E2 ligases, catalyzes the 'Lys-63'-linked polyubiquitination of RIGI oligomerized on viral RNAs, an essential step in the activation of the RIG-I signaling pathway (PubMed:19017631, PubMed:21147464, PubMed:28469175, PubMed:31006531). Through a ubiquitin-independent parallel mechanism, which consists in bridging RIGI filaments forming on longer viral RNAs, further activates the RIG-I signaling pathway (PubMed:31006531). This second mechanism that synergizes with the ubiquitin-dependent one would thereby allow an RNA length-dependent regulation of the RIG-I signaling pathway (Probable). Associated with the E2 ligase UBE2N, also constitutively synthesizes unanchored 'Lys-63'-linked polyubiquitin chains that may also activate the RIG-I signaling pathway (PubMed:28469175, PubMed:31006531).<ref>PMID:19017631</ref> <ref>PMID:19484123</ref> <ref>PMID:21147464</ref> <ref>PMID:23950712</ref> <ref>PMID:28469175</ref> <ref>PMID:31006531</ref> <ref>PMID:31006531</ref>
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==See Also==
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*[[Ubiquitin protein ligase 3D structures|Ubiquitin protein ligase 3D structures]]
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== References ==
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<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Homo sapiens]]
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Z-disk]]
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[[Category: Ahmad S]]
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[[Category: Hur S]]
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[[Category: Kato K]]

Current revision

Cryo-EM structure of RIG-I:dsRNA filament in complex with RIPLET PrySpry domain (trimer)

PDB ID 7jl3

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