5sdn

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==PanDDA analysis group deposition -- Crystal Structure of Porphyromonas gingivalis in complex with Z437584380==
==PanDDA analysis group deposition -- Crystal Structure of Porphyromonas gingivalis in complex with Z437584380==
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<StructureSection load='5sdn' size='340' side='right'caption='[[5sdn]]' scene=''>
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<StructureSection load='5sdn' size='340' side='right'caption='[[5sdn]], [[Resolution|resolution]] 2.02&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5SDN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5SDN FirstGlance]. <br>
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<table><tr><td colspan='2'>[[5sdn]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Porphyromonas_gingivalis Porphyromonas gingivalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5SDN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5SDN FirstGlance]. <br>
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</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5sdn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5sdn OCA], [https://pdbe.org/5sdn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5sdn RCSB], [https://www.ebi.ac.uk/pdbsum/5sdn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5sdn ProSAT]</span></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.023&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=I8D:(4-chlorophenyl)(thiomorpholin-4-yl)methanone'>I8D</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5sdn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5sdn OCA], [https://pdbe.org/5sdn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5sdn RCSB], [https://www.ebi.ac.uk/pdbsum/5sdn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5sdn ProSAT]</span></td></tr>
</table>
</table>
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== Function ==
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[https://www.uniprot.org/uniprot/DPP11_PORG3 DPP11_PORG3] Catalyzes the removal of dipeptides from the N-terminus of oligopeptides. Shows a strict specificity for acidic residues (Asp or Glu) in the P1 position, and has a hydrophobic residue preference at the P2 position. Preferentially cleaves the synthetic substrate Leu-Asp-methylcoumaryl-7-amide (Leu-Asp-MCA) as compared to Leu-Glu-MCA. Is involved in amino acid metabolism and bacterial growth of asaccharolytic P.gingivalis, that utilizes amino acids from extracellular proteinaceous nutrients as energy and carbon sources.<ref>PMID:21896480</ref> <ref>PMID:23246913</ref>
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==See Also==
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*[[Dipeptidyl peptidase 3D structures|Dipeptidyl peptidase 3D structures]]
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== References ==
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<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Porphyromonas gingivalis]]
[[Category: Bezerra GA]]
[[Category: Bezerra GA]]
[[Category: Bountra C]]
[[Category: Bountra C]]

Revision as of 15:31, 6 March 2024

PanDDA analysis group deposition -- Crystal Structure of Porphyromonas gingivalis in complex with Z437584380

PDB ID 5sdn

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