5t3a

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (15:35, 6 March 2024) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='5t3a' size='340' side='right'caption='[[5t3a]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
<StructureSection load='5t3a' size='340' side='right'caption='[[5t3a]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5t3a]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5T3A OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5T3A FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5t3a]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Visna-maedi_virus Visna-maedi virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5T3A OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5T3A FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.501&#8491;</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5t3a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5t3a OCA], [http://pdbe.org/5t3a PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5t3a RCSB], [http://www.ebi.ac.uk/pdbsum/5t3a PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5t3a ProSAT]</span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5t3a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5t3a OCA], [https://pdbe.org/5t3a PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5t3a RCSB], [https://www.ebi.ac.uk/pdbsum/5t3a PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5t3a ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/POL_VILVK POL_VILVK]] During replicative cycle of retroviruses, the reverse-transcribed viral DNA is integrated into the host chromosome by the viral integrase enzyme. RNase H activity is associated with the reverse transcriptase.
+
[https://www.uniprot.org/uniprot/POL_VILVK POL_VILVK] During replicative cycle of retroviruses, the reverse-transcribed viral DNA is integrated into the host chromosome by the viral integrase enzyme. RNase H activity is associated with the reverse transcriptase.
-
<div style="background-color:#fffaf0;">
+
-
== Publication Abstract from PubMed ==
+
-
Retroviral integrase (IN) functions within the intasome nucleoprotein complex to catalyze insertion of viral DNA into cellular chromatin. Using cryo-electron microscopy, we now visualize the functional maedi-visna lentivirus intasome at 4.9 angstrom resolution. The intasome comprises a homo-hexadecamer of IN with a tetramer-of-tetramers architecture featuring eight structurally distinct types of IN protomers supporting two catalytically competent subunits. The conserved intasomal core, previously observed in simpler retroviral systems, is formed between two IN tetramers, with a pair of C-terminal domains from flanking tetramers completing the synaptic interface. Our results explain how HIV-1 IN, which self-associates into higher-order multimers, can form a functional intasome, reconcile the bulk of early HIV-1 IN biochemical and structural data, and provide a lentiviral platform for design of HIV-1 IN inhibitors.
+
-
 
+
-
A supramolecular assembly mediates lentiviral DNA integration.,Ballandras-Colas A, Maskell DP, Serrao E, Locke J, Swuec P, Jonsson SR, Kotecha A, Cook NJ, Pye VE, Taylor IA, Andresdottir V, Engelman AN, Costa A, Cherepanov P Science. 2017 Jan 6;355(6320):93-95. doi: 10.1126/science.aah7002. PMID:28059770<ref>PMID:28059770</ref>
+
-
 
+
-
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+
-
</div>
+
-
<div class="pdbe-citations 5t3a" style="background-color:#fffaf0;"></div>
+
==See Also==
==See Also==
*[[Retroviral integrase 3D structures|Retroviral integrase 3D structures]]
*[[Retroviral integrase 3D structures|Retroviral integrase 3D structures]]
-
== References ==
 
-
<references/>
 
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Cherepanov, P]]
+
[[Category: Visna-maedi virus]]
-
[[Category: Cook, N J]]
+
[[Category: Cherepanov P]]
-
[[Category: Pye, V E]]
+
[[Category: Cook NJ]]
-
[[Category: C-terminal domain]]
+
[[Category: Pye VE]]
-
[[Category: Catalytic core domain]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Visna virus integrase]]
+

Current revision

Maedi-Visna virus (MVV) integrase CCD-CTD (residues 60-275)

PDB ID 5t3a

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5t3a"
Personal tools