3a4i
From Proteopedia
(Difference between revisions)
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<StructureSection load='3a4i' size='340' side='right'caption='[[3a4i]], [[Resolution|resolution]] 1.79Å' scene=''> | <StructureSection load='3a4i' size='340' side='right'caption='[[3a4i]], [[Resolution|resolution]] 1.79Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>[[3a4i]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/ | + | <table><tr><td colspan='2'>[[3a4i]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2z0c 2z0c]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A4I OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3A4I FirstGlance]. <br> |
- | </td></tr><tr id=' | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.79Å</td></tr> |
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3a4i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a4i OCA], [https://pdbe.org/3a4i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3a4i RCSB], [https://www.ebi.ac.uk/pdbsum/3a4i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3a4i ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3a4i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a4i OCA], [https://pdbe.org/3a4i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3a4i RCSB], [https://www.ebi.ac.uk/pdbsum/3a4i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3a4i ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Function == | == Function == | ||
- | + | [https://www.uniprot.org/uniprot/GUAAB_PYRHO GUAAB_PYRHO] Catalyzes the synthesis of GMP from XMP (By similarity). | |
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3a4i ConSurf]. | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3a4i ConSurf]. | ||
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
- | <div style="background-color:#fffaf0;"> | ||
- | == Publication Abstract from PubMed == | ||
- | Guanosine 5'-monophosphate synthetase(s) (GMPS) catalyzes the final step of the de novo synthetic pathway of purine nucleotides. GMPS consists of two functional units that are present as domains or subunits: glutamine amidotransferase (GATase) and ATP pyrophosphatase (ATPPase). GATase hydrolyzes glutamine to yield glutamate and ammonia, while ATPPase utilizes ammonia to convert adenyl xanthosine 5'-monophosphate (adenyl-XMP) into guanosine 5'-monophosphate. Here we report the crystal structure of PH-ATPPase (the ATPPase subunit of the two-subunit-type GMPS from the hyperthermophilic archaeon Pyrococcus horikoshii OT3). PH-ATPPase consists of two domains (N-domain and C-domain) and exists as a homodimer in the crystal and in solution. The N-domain contains an ATP-binding platform called P-loop, whereas the C-domain contains the xanthosine 5'-monophosphate (XMP)-binding site and also contributes to homodimerization. We have also demonstrated that PH-GATase (the glutamine amidotransferase subunit of the two-subunit-type GMPS from the hyperthermophilic archaeon P. horikoshii OT3) alone is inactive, and that all substrates of PH-ATPPase except for ammonia (Mg(2+), ATP and XMP) are required to stabilize the active complex of PH-ATPPase and PH-GATase subunits. | ||
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- | Crystal structure of the ATPPase subunit and its substrate-dependent association with the GATase subunit: a novel regulatory mechanism for a two-subunit-type GMP synthetase from Pyrococcus horikoshii OT3.,Maruoka S, Horita S, Lee WC, Nagata K, Tanokura M J Mol Biol. 2010 Jan 15;395(2):417-29. Epub 2009 Nov 10. PMID:19900465<ref>PMID:19900465</ref> | ||
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- | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
- | </div> | ||
- | <div class="pdbe-citations 3a4i" style="background-color:#fffaf0;"></div> | ||
==See Also== | ==See Also== | ||
*[[GMP synthase|GMP synthase]] | *[[GMP synthase|GMP synthase]] | ||
- | == References == | ||
- | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
- | [[Category: Pyrococcus shinkaii]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
- | [[Category: Horita | + | [[Category: Pyrococcus horikoshii]] |
- | [[Category: Lee | + | [[Category: Horita S]] |
- | [[Category: Maruoka | + | [[Category: Lee WC]] |
- | [[Category: Nagata | + | [[Category: Maruoka S]] |
- | [[Category: Tanokura | + | [[Category: Nagata K]] |
- | + | [[Category: Tanokura M]] | |
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Current revision
Crystal structure of GMP synthetase PH1347 from Pyrococcus horikoshii OT3
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