3a4i

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Current revision (13:59, 13 March 2024) (edit) (undo)
 
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<StructureSection load='3a4i' size='340' side='right'caption='[[3a4i]], [[Resolution|resolution]] 1.79&Aring;' scene=''>
<StructureSection load='3a4i' size='340' side='right'caption='[[3a4i]], [[Resolution|resolution]] 1.79&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[3a4i]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/'pyrococcus_shinkaii' 'pyrococcus shinkaii']. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2z0c 2z0c]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A4I OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3A4I FirstGlance]. <br>
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<table><tr><td colspan='2'>[[3a4i]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2z0c 2z0c]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A4I OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3A4I FirstGlance]. <br>
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</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">guaAB, PH1347 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=53953 'Pyrococcus shinkaii'])</td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.79&#8491;</td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/GMP_synthase_(glutamine-hydrolyzing) GMP synthase (glutamine-hydrolyzing)], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.3.5.2 6.3.5.2] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3a4i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a4i OCA], [https://pdbe.org/3a4i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3a4i RCSB], [https://www.ebi.ac.uk/pdbsum/3a4i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3a4i ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3a4i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a4i OCA], [https://pdbe.org/3a4i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3a4i RCSB], [https://www.ebi.ac.uk/pdbsum/3a4i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3a4i ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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[[https://www.uniprot.org/uniprot/GUAAB_PYRHO GUAAB_PYRHO]] Catalyzes the synthesis of GMP from XMP (By similarity).
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[https://www.uniprot.org/uniprot/GUAAB_PYRHO GUAAB_PYRHO] Catalyzes the synthesis of GMP from XMP (By similarity).
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3a4i ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3a4i ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
 
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== Publication Abstract from PubMed ==
 
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Guanosine 5'-monophosphate synthetase(s) (GMPS) catalyzes the final step of the de novo synthetic pathway of purine nucleotides. GMPS consists of two functional units that are present as domains or subunits: glutamine amidotransferase (GATase) and ATP pyrophosphatase (ATPPase). GATase hydrolyzes glutamine to yield glutamate and ammonia, while ATPPase utilizes ammonia to convert adenyl xanthosine 5'-monophosphate (adenyl-XMP) into guanosine 5'-monophosphate. Here we report the crystal structure of PH-ATPPase (the ATPPase subunit of the two-subunit-type GMPS from the hyperthermophilic archaeon Pyrococcus horikoshii OT3). PH-ATPPase consists of two domains (N-domain and C-domain) and exists as a homodimer in the crystal and in solution. The N-domain contains an ATP-binding platform called P-loop, whereas the C-domain contains the xanthosine 5'-monophosphate (XMP)-binding site and also contributes to homodimerization. We have also demonstrated that PH-GATase (the glutamine amidotransferase subunit of the two-subunit-type GMPS from the hyperthermophilic archaeon P. horikoshii OT3) alone is inactive, and that all substrates of PH-ATPPase except for ammonia (Mg(2+), ATP and XMP) are required to stabilize the active complex of PH-ATPPase and PH-GATase subunits.
 
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Crystal structure of the ATPPase subunit and its substrate-dependent association with the GATase subunit: a novel regulatory mechanism for a two-subunit-type GMP synthetase from Pyrococcus horikoshii OT3.,Maruoka S, Horita S, Lee WC, Nagata K, Tanokura M J Mol Biol. 2010 Jan 15;395(2):417-29. Epub 2009 Nov 10. PMID:19900465<ref>PMID:19900465</ref>
 
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
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</div>
 
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<div class="pdbe-citations 3a4i" style="background-color:#fffaf0;"></div>
 
==See Also==
==See Also==
*[[GMP synthase|GMP synthase]]
*[[GMP synthase|GMP synthase]]
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== References ==
 
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<references/>
 
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Pyrococcus shinkaii]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Horita, S]]
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[[Category: Pyrococcus horikoshii]]
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[[Category: Lee, W C]]
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[[Category: Horita S]]
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[[Category: Maruoka, S]]
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[[Category: Lee WC]]
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[[Category: Nagata, K]]
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[[Category: Maruoka S]]
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[[Category: Tanokura, M]]
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[[Category: Nagata K]]
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[[Category: Atp pyrophosphatase]]
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[[Category: Tanokura M]]
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[[Category: Atp-binding]]
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[[Category: Glutamine amidotransferase]]
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[[Category: Gmp biosynthesis]]
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[[Category: Gmp synthetase]]
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[[Category: Ligase]]
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[[Category: Nucleotide-binding]]
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[[Category: Purine biosynthesis]]
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[[Category: Purine nucleotide biosynthesis]]
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Current revision

Crystal structure of GMP synthetase PH1347 from Pyrococcus horikoshii OT3

PDB ID 3a4i

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