5uu5

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Current revision (14:09, 13 March 2024) (edit) (undo)
 
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<SX load='5uu5' size='340' side='right' viewer='molstar' caption='[[5uu5]], [[Resolution|resolution]] 3.30&Aring;' scene=''>
<SX load='5uu5' size='340' side='right' viewer='molstar' caption='[[5uu5]], [[Resolution|resolution]] 3.30&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[5uu5]] is a 7 chain structure with sequence from [http://en.wikipedia.org/wiki/Bpp22 Bpp22]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5UU5 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5UU5 FirstGlance]. <br>
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<table><tr><td colspan='2'>[[5uu5]] is a 7 chain structure with sequence from [https://en.wikipedia.org/wiki/Salmonella_virus_P22 Salmonella virus P22]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5UU5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5UU5 FirstGlance]. <br>
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</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2xyz|2xyz]]</td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 3.3&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5uu5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5uu5 OCA], [http://pdbe.org/5uu5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5uu5 RCSB], [http://www.ebi.ac.uk/pdbsum/5uu5 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5uu5 ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5uu5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5uu5 OCA], [https://pdbe.org/5uu5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5uu5 RCSB], [https://www.ebi.ac.uk/pdbsum/5uu5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5uu5 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/CAPSD_BPP22 CAPSD_BPP22]] Assembles to form an icosahedral capsid with a T=7 symmetry.
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[https://www.uniprot.org/uniprot/CAPSD_BPP22 CAPSD_BPP22] Assembles to form an icosahedral capsid with a T=7 symmetry.
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Electron cryomicroscopy (cryo-EM) has been used to determine the atomic coordinates (models) from density maps of biological assemblies. These models can be assessed by their overall fit to the experimental data and stereochemical information. However, these models do not annotate the actual density values of the atoms nor their positional uncertainty. Here, we introduce a computational procedure to derive an atomic model from a cryo-EM map with annotated metadata. The accuracy of such a model is validated by a faithful replication of the experimental cryo-EM map computed using the coordinates and associated metadata. The functional interpretation of any structural features in the model and its utilization for future studies can be made in the context of its measure of uncertainty. We applied this protocol to the 3.3-A map of the mature P22 bacteriophage capsid, a large and complex macromolecular assembly. With this protocol, we identify and annotate previously undescribed molecular interactions between capsid subunits that are crucial to maintain stability in the absence of cementing proteins or cross-linking, as occur in other bacteriophages.
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Accurate model annotation of a near-atomic resolution cryo-EM map.,Hryc CF, Chen DH, Afonine PV, Jakana J, Wang Z, Haase-Pettingell C, Jiang W, Adams PD, King JA, Schmid MF, Chiu W Proc Natl Acad Sci U S A. 2017 Mar 7. pii: 201621152. doi:, 10.1073/pnas.1621152114. PMID:28270620<ref>PMID:28270620</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 5uu5" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
__TOC__
</SX>
</SX>
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[[Category: Bpp22]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Adams, P D]]
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[[Category: Salmonella virus P22]]
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[[Category: Afonine, P V]]
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[[Category: Adams PD]]
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[[Category: Chen, D H]]
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[[Category: Afonine PV]]
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[[Category: Chiu, W]]
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[[Category: Chen D-H]]
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[[Category: Haase-Pettingell, C]]
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[[Category: Chiu W]]
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[[Category: Hryc, C F]]
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[[Category: Haase-Pettingell C]]
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[[Category: Jakana, J]]
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[[Category: Hryc CF]]
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[[Category: Jiang, W]]
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[[Category: Jakana J]]
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[[Category: King, J A]]
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[[Category: Jiang W]]
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[[Category: Schmid, M F]]
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[[Category: King JA]]
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[[Category: Wang, Z]]
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[[Category: Schmid MF]]
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[[Category: P22 bacteriophage]]
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[[Category: Wang Z]]
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[[Category: Virus]]
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Current revision

Bacteriophage P22 mature virion capsid protein

5uu5, resolution 3.30Å

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OCA

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