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| ==Crystal structure of Caenorhabditis elegans NAP1== | | ==Crystal structure of Caenorhabditis elegans NAP1== |
- | <StructureSection load='6n2g' size='340' side='right' caption='[[6n2g]], [[Resolution|resolution]] 3.00Å' scene=''> | + | <StructureSection load='6n2g' size='340' side='right'caption='[[6n2g]], [[Resolution|resolution]] 3.00Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[6n2g]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Caeel Caeel]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6N2G OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6N2G FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6n2g]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Caenorhabditis_elegans Caenorhabditis elegans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6N2G OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6N2G FirstGlance]. <br> |
- | </td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">nap-1, CELE_D2096.8, D2096.8 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=6239 CAEEL])</td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.003Å</td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6n2g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6n2g OCA], [http://pdbe.org/6n2g PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6n2g RCSB], [http://www.ebi.ac.uk/pdbsum/6n2g PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6n2g ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6n2g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6n2g OCA], [https://pdbe.org/6n2g PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6n2g RCSB], [https://www.ebi.ac.uk/pdbsum/6n2g PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6n2g ProSAT]</span></td></tr> |
| </table> | | </table> |
- | <div style="background-color:#fffaf0;">
| + | == Function == |
- | == Publication Abstract from PubMed == | + | [https://www.uniprot.org/uniprot/Q19007_CAEEL Q19007_CAEEL] |
- | Nucleosome assembly proteins (Naps) influence chromatin dynamics by directly binding to histones. Here we provide a comprehensive structural and biochemical analysis of a Nap protein from Caenorhabditis elegans (CeNap1). CeNap1 naturally lacks the acidic N-terminal tail and has a short C-terminal tail compared to many other Nap proteins. Comparison with full length and a tail-less constructs of Saccharomyces cerevisiae Nap1 (ScNap1) uncovers the role of these tails in self-association, histone-binding, and competing H2A-H2B from DNA. We find that the presence of tails influences the stoichiometry of H2A-H2B-binding and is required to compete interactions between H2A-H2B and DNA. The absolute stoichiometry of the Nap protein and H2A-H2B complex is 2:1 or 2:2, with only a very small population of higher-order oligomers occurring at 150 mM NaCl. We also show that H3-H4 binds differently than H2A-H2B, and that a (H3-H4)2 tetramer can simultaneously bind two Nap2 protein homodimers.
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- | Characterization of Caenorhabditis elegans Nucleosome Assembly Protein 1 Uncovers the Role of Acidic Tails in Histone Binding.,Sarkar P, Zhang N, Bhattacharyya S, Salvador K, D'Arcy S Biochemistry. 2018 Dec 6. doi: 10.1021/acs.biochem.8b01033. PMID:30521320<ref>PMID:30521320</ref>
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- | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
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- | </div>
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- | <div class="pdbe-citations 6n2g" style="background-color:#fffaf0;"></div>
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- | == References ==
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- | <references/>
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| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Caeel]] | + | [[Category: Caenorhabditis elegans]] |
- | [[Category: Bhattacharyya, S]] | + | [[Category: Large Structures]] |
- | [[Category: DArcy, S]] | + | [[Category: Bhattacharyya S]] |
- | [[Category: Chaperone]] | + | [[Category: DArcy S]] |
- | [[Category: Histone binding]]
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- | [[Category: Nucleosome assembly]]
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