1aec

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 3: Line 3:
<StructureSection load='1aec' size='340' side='right'caption='[[1aec]], [[Resolution|resolution]] 1.86&Aring;' scene=''>
<StructureSection load='1aec' size='340' side='right'caption='[[1aec]], [[Resolution|resolution]] 1.86&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1aec]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Actch Actch]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1AEC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1AEC FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1aec]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Actinidia_chinensis Actinidia chinensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1AEC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1AEC FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=E64:N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE'>E64</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.86&#8491;</td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Actinidain Actinidain], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.22.14 3.4.22.14] </span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=E64:N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE'>E64</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1aec FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1aec OCA], [https://pdbe.org/1aec PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1aec RCSB], [https://www.ebi.ac.uk/pdbsum/1aec PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1aec ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1aec FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1aec OCA], [https://pdbe.org/1aec PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1aec RCSB], [https://www.ebi.ac.uk/pdbsum/1aec PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1aec ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[https://www.uniprot.org/uniprot/ACTN_ACTCH ACTN_ACTCH]] Cysteine protease responsible for the cleavage of kiwellin into kissper and KiTH.<ref>PMID:18442249</ref>
+
[https://www.uniprot.org/uniprot/ACTN_ACTCC ACTN_ACTCC] Cysteine protease responsible for the cleavage of kiwellin into kissper and KiTH.<ref>PMID:18442249</ref>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 20: Line 20:
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1aec ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1aec ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
-
<div style="background-color:#fffaf0;">
 
-
== Publication Abstract from PubMed ==
 
-
E-64, 1-(L-trans-epoxysuccinylleucylamino)-4-guanidinobutane, is a potent and highly selective irreversible inhibitor of cysteine proteases. The crystal structure of a complex of actinidin and E-64 has been determined at 1.86-A resolution by using the difference Fourier method and refined to an R-factor of 14.5%. The electron density map clearly shows that the C2 atom of the E-64 epoxide ring is covalently bonded to the S atom of the active-site cysteine 25. The charged carboxyl group of E-64 forms four H-bonds with the protein and thus may play an important role in favorably positioning the inhibitor molecule for nucleophilic attack by the active-site thiolate anion. The interaction features between E-64 and actinidin are very similar to those seen in the papain-E-64 complex; however, the amino-4-guanidinobutane group orients differently. The crystals of the actinidin-E-64 complex diffracted much better than the papain-E-64 complex, and consequently the present study provides more precise geometrical information on the binding of the inhibitor. Moreover, this study provides yet another confirmation that the binding of E-64 is at the S subsites and not at the S' subsites as has been previously proposed. The original actinidin structure has been revised using the new cDNA sequence information.
 
- 
-
Crystal structure of an actinidin-E-64 complex.,Varughese KI, Su Y, Cromwell D, Hasnain S, Xuong NH Biochemistry. 1992 Jun 9;31(22):5172-6. PMID:1606141<ref>PMID:1606141</ref>
 
- 
-
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
-
</div>
 
-
<div class="pdbe-citations 1aec" style="background-color:#fffaf0;"></div>
 
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Actch]]
+
[[Category: Actinidia chinensis]]
-
[[Category: Actinidain]]
+
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Varughese, K I]]
+
[[Category: Varughese KI]]
-
[[Category: Hydrolase]]
+

Revision as of 15:23, 13 March 2024

CRYSTAL STRUCTURE OF ACTINIDIN-E-64 COMPLEX+

PDB ID 1aec

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools