3r48

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<StructureSection load='3r48' size='340' side='right'caption='[[3r48]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
<StructureSection load='3r48' size='340' side='right'caption='[[3r48]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[3r48]] is a 6 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3R48 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3R48 FirstGlance]. <br>
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<table><tr><td colspan='2'>[[3r48]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3R48 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3R48 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.0011&#8491;</td></tr>
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene>, <scene name='pdbligand=NH2:AMINO+GROUP'>NH2</scene></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NH2:AMINO+GROUP'>NH2</scene></td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3r3k|3r3k]], [[3r46|3r46]], [[3r47|3r47]]</div></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3r48 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3r48 OCA], [https://pdbe.org/3r48 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3r48 RCSB], [https://www.ebi.ac.uk/pdbsum/3r48 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3r48 ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3r48 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3r48 OCA], [https://pdbe.org/3r48 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3r48 RCSB], [https://www.ebi.ac.uk/pdbsum/3r48 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3r48 ProSAT]</span></td></tr>
</table>
</table>
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<div style="background-color:#fffaf0;">
 
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== Publication Abstract from PubMed ==
 
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The design of new proteins that expand the repertoire of natural protein structures represents a formidable challenge. Success in this area would increase understanding of protein structure and present new scaffolds that could be exploited in biotechnology and synthetic biology. Here we describe the design, characterization and X-ray crystal structure of a new coiled-coil protein. The de novo sequence forms a stand-alone, parallel, six-helix bundle with a channel running through it. Although lined exclusively by hydrophobic leucine and isoleucine side chains, the 6-A channel is permeable to water. One layer of leucine residues within the channel is mutable, accepting polar aspartic acid and histidine side chains, which leads to subdivision and organization of solvent within the lumen. Moreover, these mutants can be combined to form a stable and unique (Asp-His)(3) heterohexamer. These new structures provide a basis for engineering de novo proteins with new functions.
 
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A de novo peptide hexamer with a mutable channel.,Zaccai NR, Chi B, Thomson AR, Boyle AL, Bartlett GJ, Bruning M, Linden N, Sessions RB, Booth PJ, Brady RL, Woolfson DN Nat Chem Biol. 2011 Oct 30. doi: 10.1038/nchembio.692. PMID:22037471<ref>PMID:22037471</ref>
 
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
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</div>
 
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<div class="pdbe-citations 3r48" style="background-color:#fffaf0;"></div>
 
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== References ==
 
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<references/>
 
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Brady, R L]]
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[[Category: Synthetic construct]]
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[[Category: Chi, B H.C]]
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[[Category: Brady RL]]
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[[Category: Woolfson, D N]]
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[[Category: Chi BHC]]
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[[Category: Zaccai, N R]]
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[[Category: Woolfson DN]]
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[[Category: Coiled coil domain]]
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[[Category: Zaccai NR]]
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[[Category: De novo protein]]
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[[Category: Hexamer]]
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[[Category: Hydrophobic channel]]
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[[Category: Kih interaction]]
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[[Category: Synthetic biology]]
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Revision as of 12:10, 14 March 2024

Crystal structure of a hetero-hexamer coiled coil

PDB ID 3r48

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