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3s8y

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Current revision (12:50, 14 March 2024) (edit) (undo)
 
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<StructureSection load='3s8y' size='340' side='right'caption='[[3s8y]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
<StructureSection load='3s8y' size='340' side='right'caption='[[3s8y]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[3s8y]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Dsm_14852 Dsm 14852]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3S8Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3S8Y FirstGlance]. <br>
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<table><tr><td colspan='2'>[[3s8y]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Oleispira_antarctica Oleispira antarctica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3S8Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3S8Y FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BR:BROMIDE+ION'>BR</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3i6y|3i6y]]</div></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BR:BROMIDE+ION'>BR</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">olei01171 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=188908 DSM 14852])</td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Arylesterase Arylesterase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.2 3.1.1.2] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3s8y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3s8y OCA], [https://pdbe.org/3s8y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3s8y RCSB], [https://www.ebi.ac.uk/pdbsum/3s8y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3s8y ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3s8y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3s8y OCA], [https://pdbe.org/3s8y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3s8y RCSB], [https://www.ebi.ac.uk/pdbsum/3s8y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3s8y ProSAT]</span></td></tr>
</table>
</table>
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<div style="background-color:#fffaf0;">
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== Function ==
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== Publication Abstract from PubMed ==
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[https://www.uniprot.org/uniprot/D0VWZ4_OLEAN D0VWZ4_OLEAN]
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The uncharacterized alpha/beta-hydrolase protein OLEI01171 from the psychrophilic marine bacterium Oleispira antarctica belongs to the PF00756 family of putative esterases, which also includes human esterase D. In the present paper we show that purified recombinant OLEI01171 exhibits high esterase activity against the model esterase substrate alpha-naphthyl acetate at 5-30 degrees C with maximal activity at 15-20 degrees C. The esterase activity of OLEI01171 was stimulated 3-8-fold by the addition of chloride or several other anions (0.1-1.0 M). Compared with mesophilic PF00756 esterases, OLEI01171 exhibited a lower overall protein thermostability. Two crystal structures of OLEI01171 were solved at 1.75 and 2.1 A resolution and revealed a classical serine hydrolase catalytic triad and the presence of a chloride or bromide ion bound in the active site close to the catalytic Ser148. Both anions were found to co-ordinate a potential catalytic water molecule located in the vicinity of the catalytic triad His257. The results of the present study suggest that the bound anion perhaps contributes to the polarization of the catalytic water molecule and increases the rate of the hydrolysis of an acyl-enzyme intermediate. Alanine replacement mutagenesis of OLEI01171 identified ten amino acid residues important for esterase activity. The replacement of Asn225 by lysine had no significant effect on the activity or thermostability of OLEI01171, but resulted in a detectable increase of activity at 35-45 degrees C. The present study has provided insight into the molecular mechanisms of activity of a cold-active and anion-activated carboxyl esterase.
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Structure and activity of the cold-active and anion-activated carboxyl esterase OLEI01171 from the oil-degrading marine bacterium Oleispira antarctica.,Lemak S, Tchigvintsev A, Petit P, Flick R, Singer AU, Brown G, Evdokimova E, Egorova O, Gonzalez CF, Chernikova TN, Yakimov MM, Kube M, Reinhardt R, Golyshin PN, Savchenko A, Yakunin AF Biochem J. 2012 Jul 15;445(2):193-203. PMID:22519667<ref>PMID:22519667</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 3s8y" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Arylesterase]]
 
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[[Category: Dsm 14852]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Dong, A]]
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[[Category: Oleispira antarctica]]
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[[Category: Kagan, O]]
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[[Category: Dong A]]
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[[Category: Petit, P]]
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[[Category: Kagan O]]
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[[Category: Savchenko, A]]
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[[Category: Petit P]]
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[[Category: Yakunin, A F]]
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[[Category: Savchenko A]]
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[[Category: Hydrolase]]
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[[Category: Yakunin AF]]
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[[Category: Rossmann fold]]
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Current revision

Bromide soaked structure of an esterase from the oil-degrading bacterium Oleispira antarctica

PDB ID 3s8y

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