3v86
From Proteopedia
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== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[3v86]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3V86 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3V86 FirstGlance]. <br> | <table><tr><td colspan='2'>[[3v86]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3V86 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3V86 FirstGlance]. <br> | ||
| - | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3v86 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3v86 OCA], [https://pdbe.org/3v86 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3v86 RCSB], [https://www.ebi.ac.uk/pdbsum/3v86 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3v86 ProSAT]</span></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.91Å</td></tr> |
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3v86 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3v86 OCA], [https://pdbe.org/3v86 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3v86 RCSB], [https://www.ebi.ac.uk/pdbsum/3v86 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3v86 ProSAT]</span></td></tr> | ||
</table> | </table> | ||
| - | <div style="background-color:#fffaf0;"> | ||
| - | == Publication Abstract from PubMed == | ||
| - | Protein crystals have catalytic and materials applications and are central to efforts in structural biology and therapeutic development. Designing predetermined crystal structures can be subtle given the complexity of proteins and the noncovalent interactions that govern crystallization. De novo protein design provides an approach to engineer highly complex nanoscale molecular structures, and often the positions of atoms can be programmed with sub-A precision. Herein, a computational approach is presented for the design of proteins that self-assemble in three dimensions to yield macroscopic crystals. A three-helix coiled-coil protein is designed de novo to form a polar, layered, three-dimensional crystal having the P6 space group, which has a "honeycomb-like" structure and hexameric channels that span the crystal. The approach involves: (i) creating an ensemble of crystalline structures consistent with the targeted symmetry; (ii) characterizing this ensemble to identify "designable" structures from minima in the sequence-structure energy landscape and designing sequences for these structures; (iii) experimentally characterizing candidate proteins. A 2.1 A resolution X-ray crystal structure of one such designed protein exhibits sub-A agreement [backbone root mean square deviation (rmsd)] with the computational model of the crystal. This approach to crystal design has potential applications to the de novo design of nanostructured materials and to the modification of natural proteins to facilitate X-ray crystallographic analysis. | ||
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| - | Computational design of a protein crystal.,Lanci CJ, Macdermaid CM, Kang SG, Acharya R, North B, Yang X, Qiu XJ, Degrado WF, Saven JG Proc Natl Acad Sci U S A. 2012 Apr 25. PMID:22538812<ref>PMID:22538812</ref> | ||
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| - | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| - | </div> | ||
| - | <div class="pdbe-citations 3v86" style="background-color:#fffaf0;"></div> | ||
| - | == References == | ||
| - | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
| - | [[Category: Acharya | + | [[Category: Acharya R]] |
| - | [[Category: DeGrado | + | [[Category: DeGrado W]] |
| - | [[Category: North | + | [[Category: North B]] |
| - | [[Category: Saven | + | [[Category: Saven J]] |
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Current revision
Computational Design of a Protein Crystal
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