3fi7

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Current revision (08:25, 20 March 2024) (edit) (undo)
 
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<StructureSection load='3fi7' size='340' side='right'caption='[[3fi7]], [[Resolution|resolution]] 2.35&Aring;' scene=''>
<StructureSection load='3fi7' size='340' side='right'caption='[[3fi7]], [[Resolution|resolution]] 2.35&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[3fi7]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FI7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3FI7 FirstGlance]. <br>
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<table><tr><td colspan='2'>[[3fi7]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Listeria_monocytogenes_EGD-e Listeria monocytogenes EGD-e]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FI7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3FI7 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.35&#8491;</td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Mannosyl-glycoprotein_endo-beta-N-acetylglucosaminidase Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.96 3.2.1.96] </span></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3fi7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fi7 OCA], [https://pdbe.org/3fi7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3fi7 RCSB], [https://www.ebi.ac.uk/pdbsum/3fi7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3fi7 ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3fi7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fi7 OCA], [https://pdbe.org/3fi7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3fi7 RCSB], [https://www.ebi.ac.uk/pdbsum/3fi7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3fi7 ProSAT]</span></td></tr>
</table>
</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q8Y842_LISMO Q8Y842_LISMO]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3fi7 ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3fi7 ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
 
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== Publication Abstract from PubMed ==
 
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During a bacterial infection, each successive step is orchestrated by a dedicated set of virulence factors. In Gram-positive bacteria, the presentation or release of such factors is crucially dependent on the continual remodelling of the cell wall. We have investigated the autolysin or peptidoglycan hydrolase Auto (Lmo1076) from the human pathogen Listeria monocytogenes to structurally and biochemically underpin its role in host cell invasion. We demonstrate that Auto is an N-acetylglucosaminidase, that it is autoinhibited when newly secreted but activated by proteolytic cleavage, that it has an acidic pH optimum and that it preferentially cleaves acetylated over de-acetylated peptidoglycan. The crystal structure of Auto, the first for glycoside hydrolase family 73, and the first for a listerial autolysin, indicates that autoinhibition is due to an N-terminal alpha-helix unique to Auto that physically blocks the substrate-binding cleft. We identify Glu122 and Glu156 as the two catalytically essential carboxylate groups. The physical properties of Auto as well as its localization to lipoteichoic acid by its four C-terminal GW modules imply cell wall degradation by Auto to be highly co-ordinated. Its spatio-temporally controlled activation and localized activity in an acidified environment indicate that it facilitates remodelling of the cell wall and may be involved in co-ordinating the release of virulence factors at specific stages of an infection.
 
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Structural basis for autoinhibition and activation of Auto, a virulence-associated peptidoglycan hydrolase of Listeria monocytogenes.,Bublitz M, Polle L, Holland C, Heinz DW, Nimtz M, Schubert WD Mol Microbiol. 2009 Mar;71(6):1509-22. Epub 2009 Jan 23. PMID:19210622<ref>PMID:19210622</ref>
 
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
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</div>
 
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<div class="pdbe-citations 3fi7" style="background-color:#fffaf0;"></div>
 
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== References ==
 
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<references/>
 
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase]]
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[[Category: Listeria monocytogenes EGD-e]]
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[[Category: Bublitz, M]]
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[[Category: Bublitz M]]
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[[Category: Heinz, D W]]
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[[Category: Heinz DW]]
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[[Category: Holland, C]]
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[[Category: Holland C]]
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[[Category: Nimtz, M]]
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[[Category: Nimtz M]]
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[[Category: Polle, L]]
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[[Category: Polle L]]
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[[Category: Schubert, W D]]
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[[Category: Schubert WD]]
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[[Category: Autoinhibition]]
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[[Category: Autolysin]]
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[[Category: Gh73]]
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[[Category: Hydrolase]]
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[[Category: Listeria monocytogene]]
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[[Category: N acetylglucosaminidase]]
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[[Category: Peptidoglycan hydrolase]]
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Current revision

Crystal Structure of the autolysin Auto (Lmo1076) from Listeria monocytogenes, catalytic domain

PDB ID 3fi7

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