3mtv

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Current revision (08:31, 20 March 2024) (edit) (undo)
 
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<StructureSection load='3mtv' size='340' side='right'caption='[[3mtv]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
<StructureSection load='3mtv' size='340' side='right'caption='[[3mtv]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[3mtv]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Prrsv Prrsv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MTV OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=3MTV FirstGlance]. <br>
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<table><tr><td colspan='2'>[[3mtv]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Porcine_reproductive_and_respiratory_syndrome_virus Porcine reproductive and respiratory syndrome virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MTV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3MTV FirstGlance]. <br>
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</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=3mtv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3mtv OCA], [http://pdbe.org/3mtv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3mtv RCSB], [http://www.ebi.ac.uk/pdbsum/3mtv PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3mtv ProSAT]</span></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3mtv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3mtv OCA], [https://pdbe.org/3mtv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3mtv RCSB], [https://www.ebi.ac.uk/pdbsum/3mtv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3mtv ProSAT]</span></td></tr>
</table>
</table>
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== Function ==
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[https://www.uniprot.org/uniprot/B2ZAB4_PRRSV B2ZAB4_PRRSV]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3mtv ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3mtv ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
 
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== Publication Abstract from PubMed ==
 
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Porcine reproductive and respiratory syndrome virus (PRRSV), a member of the Arteriviridae family of Nidovirales, is the causative agent of porcine reproductive and respiratory syndrome, which results in enormous economic losses in the swine industry. As the second protein encoded by the PRRSV genome, nsp1beta cleaves itself from the downstream nsp2 protein via a C-terminal papain-like cysteine protease (PCP) domain. Although nsp1beta is known to be involved in virulence, its precise role in the process of viral infection remains unclear. In this work, we describe the homodimeric crystal structure of PRRSV nsp1beta in its natural, self-processed form. We show that the architecture of its N-terminal domain (NTD) adopts a fold closely resembling that of several known nucleases and has intrinsic nuclease activity that is strongly activated by manganese ions in vitro. Key features, however, distinguish nsp1beta from characterized nucleases, including the C-terminal PCP domain (which is responsible for the self-release of nsp1beta from nsp2), a linker domain (LKD) that connects the NTD and the PCP domain, and a C-terminal extension (CTE) that binds to and is stabilized by the putative substrate binding site of the PCPbeta domain. Combined with the reported nuclear localization of this protein, these results shed light on the self-processing mode and precise biological function of nsp1beta and thus offer a multitarget template for future drug discovery.
 
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The crystal structure of porcine reproductive and respiratory syndrome virus nonstructural protein Nsp1beta reveals a novel metal-dependent nuclease.,Xue F, Sun Y, Yan L, Zhao C, Chen J, Bartlam M, Li X, Lou Z, Rao Z J Virol. 2010 Jul;84(13):6461-71. Epub 2010 Apr 21. PMID:20410261<ref>PMID:20410261</ref>
 
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
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</div>
 
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<div class="pdbe-citations 3mtv" style="background-color:#fffaf0;"></div>
 
==See Also==
==See Also==
*[[Nonstructural protein 3D structures|Nonstructural protein 3D structures]]
*[[Nonstructural protein 3D structures|Nonstructural protein 3D structures]]
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== References ==
 
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<references/>
 
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Prrsv]]
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[[Category: Porcine reproductive and respiratory syndrome virus]]
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[[Category: Lou, Z Y]]
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[[Category: Lou ZY]]
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[[Category: Rao, Z H]]
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[[Category: Rao ZH]]
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[[Category: Sun, Y N]]
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[[Category: Sun YN]]
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[[Category: Xue, F]]
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[[Category: Xue F]]
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[[Category: Yan, L M]]
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[[Category: Yan LM]]
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[[Category: Zhao, C]]
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[[Category: Zhao C]]
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[[Category: Hydrolase]]
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[[Category: Nsp1]]
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[[Category: Nuclease]]
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[[Category: Papain-like cysteine protease]]
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Current revision

The Crystal Structure of the PRRSV Nonstructural Protein Nsp1

PDB ID 3mtv

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