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3sv0

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Current revision (08:37, 20 March 2024) (edit) (undo)
 
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<StructureSection load='3sv0' size='340' side='right'caption='[[3sv0]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
<StructureSection load='3sv0' size='340' side='right'caption='[[3sv0]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[3sv0]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Japanese_rice Japanese rice]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3SV0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3SV0 FirstGlance]. <br>
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<table><tr><td colspan='2'>[[3sv0]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Oryza_sativa_Japonica_Group Oryza sativa Japonica Group]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3SV0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3SV0 FirstGlance]. <br>
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</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3sv0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3sv0 OCA], [https://pdbe.org/3sv0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3sv0 RCSB], [https://www.ebi.ac.uk/pdbsum/3sv0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3sv0 ProSAT]</span></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3sv0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3sv0 OCA], [https://pdbe.org/3sv0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3sv0 RCSB], [https://www.ebi.ac.uk/pdbsum/3sv0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3sv0 ProSAT]</span></td></tr>
</table>
</table>
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<div style="background-color:#fffaf0;">
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== Function ==
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== Publication Abstract from PubMed ==
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[https://www.uniprot.org/uniprot/Q8LR51_ORYSJ Q8LR51_ORYSJ]
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Casein kinase I (CKI) is a protein serine/threonine kinase that is highly conserved from plants to animals. It performs various functions in both the cytoplasm and nucleus, such as DNA repair, cell cycle, cytokinesis, vesicular trafficking, morphogenesis and circadian rhythm. CKI proteins contain a highly conserved kinase domain responsible for catalytic activity at the N-terminus and a highly diverse regulatory domain responsible for determining substrate specificity at the C-terminus. CKI-like protein has been identified in plants, including in rice, but its function and structure have not been reported. Here, we report the 2.0 A crystal structure of the kinase domain of CKI-like protein from rice. Although the structure adopts the typical bi-lobal kinase architecture, the length and orientation of the glycine-rich ATP-binding motif are dynamic within the CKI family. A loop between alpha5 and alpha6 (the alpha5-alpha6 loop), which was previously not detected in the CKI family because of flexibility, was clearly detected in our structure. In addition, we identified a lipase as a substrate of CKI-like protein from rice. Phosphorylation of the lipase dramatically reduced its catalytic activity, suggesting that CKI may play a role in the regulation of lipase activity.
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Structural and functional studies of casein kinase I-like protein from rice.,Park YI, Do KH, Kim IS, Park HH Plant Cell Physiol. 2012 Feb;53(2):304-11. Epub 2011 Dec 22. PMID:22199373<ref>PMID:22199373</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 3sv0" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Japanese rice]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Do, K H]]
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[[Category: Oryza sativa Japonica Group]]
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[[Category: Park, H H]]
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[[Category: Do KH]]
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[[Category: Cytosol]]
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[[Category: Park HH]]
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[[Category: Kinase]]
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[[Category: Transferase]]
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[[Category: Typical kinase domain fold]]
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Current revision

Crystal structure of casein kinase-1 like protein in plant

PDB ID 3sv0

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