3v9d
From Proteopedia
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== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[3v9d]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3V9D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3V9D FirstGlance]. <br> | <table><tr><td colspan='2'>[[3v9d]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3V9D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3V9D FirstGlance]. <br> | ||
| - | </td></tr><tr id=' | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5Å</td></tr> |
| - | <tr id=' | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr> |
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3v9d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3v9d OCA], [https://pdbe.org/3v9d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3v9d RCSB], [https://www.ebi.ac.uk/pdbsum/3v9d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3v9d ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3v9d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3v9d OCA], [https://pdbe.org/3v9d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3v9d RCSB], [https://www.ebi.ac.uk/pdbsum/3v9d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3v9d ProSAT]</span></td></tr> | ||
</table> | </table> | ||
| - | <div style="background-color:#fffaf0;"> | ||
| - | == Publication Abstract from PubMed == | ||
| - | The crystal structure of the tetradecanucleotide sequence d(CCCCGGTACCGGGG)(2) has been determined at 2.5 A resolution in the tetragonal space group P4(1). This sequence was designed with the expectation of a four-way junction. However, the sequence crystallized as an A-DNA duplex and represents more than one full turn of the A-helix. The crystallographic asymmetric unit consists of one tetradecanucleotide duplex. The structural parameters of the A-type DNA duplex structure and the crystal-packing arrangement are described. One Mn(2+) ion was identified with direct coordination to the N7 position of G(13) and a water molecule at the major-groove side of the C(2).G(13) base pair. | ||
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| - | Structure of the tetradecanucleotide d(CCCCGGTACCGGGG)2 as an A-DNA duplex.,Mandal PK, Venkadesh S, Gautham N Acta Crystallogr Sect F Struct Biol Cryst Commun. 2012 Apr 1;68(Pt 4):393-9. Epub, 2012 Mar 27. PMID:22505405<ref>PMID:22505405</ref> | ||
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| - | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| - | </div> | ||
| - | <div class="pdbe-citations 3v9d" style="background-color:#fffaf0;"></div> | ||
| - | == References == | ||
| - | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
| - | [[Category: Gautham | + | [[Category: Gautham N]] |
| - | [[Category: Mandal | + | [[Category: Mandal PK]] |
| - | [[Category: Venkadesh | + | [[Category: Venkadesh S]] |
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Current revision
Crystal structure of the tetra-decanucleotide d(CCCCGGTACCGGGG)2 as an A-DNA duplex
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