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3vsm

From Proteopedia

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Current revision (08:41, 20 March 2024) (edit) (undo)
 
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<StructureSection load='3vsm' size='340' side='right'caption='[[3vsm]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
<StructureSection load='3vsm' size='340' side='right'caption='[[3vsm]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[3vsm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Acmnpv Acmnpv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VSM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3VSM FirstGlance]. <br>
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<table><tr><td colspan='2'>[[3vsm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Autographa_californica_nucleopolyhedrovirus Autographa californica nucleopolyhedrovirus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VSM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3VSM FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3vsn|3vsn]]</div></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">P79 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=46015 AcMNPV])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3vsm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vsm OCA], [https://pdbe.org/3vsm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3vsm RCSB], [https://www.ebi.ac.uk/pdbsum/3vsm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3vsm ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3vsm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vsm OCA], [https://pdbe.org/3vsm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3vsm RCSB], [https://www.ebi.ac.uk/pdbsum/3vsm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3vsm ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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[[https://www.uniprot.org/uniprot/OE66_NPVAC OE66_NPVAC]] Component of the polyhedra envelope.
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[https://www.uniprot.org/uniprot/OE66_NPVAC OE66_NPVAC] Component of the polyhedra envelope.
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Baculovirus envelope protein ODV-E66 (67-704), in which the N-terminal 66 amino acids are truncated, is a chondroitin lyase. It digests chondroitin and chondroitin 6-sulfate efficiently, but does not digest chondroitin 4-sulfate. This unique characteristic is useful for the preparation of specific chondroitin oligosaccharides and for investigation of the mechanism of baculovirus infection. ODV-E66 (67-704) was crystallized; the crystal diffracted to 1.8 A resolution and belonged to space group P6(2) or P6(4), with unit-cell parameters a = b = 113.5, c = 101.5 A. One molecule is assumed to be present per asymmetric unit, which gives a Matthews coefficient of 2.54 A(3) Da(-1).
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Crystallization and X-ray diffraction analysis of chondroitin lyase from baculovirus: envelope protein ODV-E66.,Kawaguchi Y, Sugiura N, Onishi M, Kimata K, Kimura M, Kakuta Y Acta Crystallogr Sect F Struct Biol Cryst Commun. 2012 Feb 1;68(Pt 2):190-2. doi:, 10.1107/S1744309111053164. Epub 2012 Jan 26. PMID:22297996<ref>PMID:22297996</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 3vsm" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Acmnpv]]
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[[Category: Autographa californica nucleopolyhedrovirus]]
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Kakuta, Y]]
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[[Category: Kakuta Y]]
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[[Category: Kawaguchi, Y]]
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[[Category: Kawaguchi Y]]
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[[Category: Kimata, K]]
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[[Category: Kimata K]]
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[[Category: Kimura, M]]
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[[Category: Kimura M]]
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[[Category: Sugiura, N]]
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[[Category: Sugiura N]]
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[[Category: Alpha/alpha troid]]
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[[Category: Beta-sandwich]]
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[[Category: Lyase activator]]
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Current revision

The crystal structure of novel chondroition lyase ODV-E66, baculovirus envelope protein

PDB ID 3vsm

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