3w6g

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Current revision (08:44, 20 March 2024) (edit) (undo)
 
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<StructureSection load='3w6g' size='340' side='right'caption='[[3w6g]], [[Resolution|resolution]] 2.25&Aring;' scene=''>
<StructureSection load='3w6g' size='340' side='right'caption='[[3w6g]], [[Resolution|resolution]] 2.25&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[3w6g]] is a 20 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3W6G OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3W6G FirstGlance]. <br>
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<table><tr><td colspan='2'>[[3w6g]] is a 20 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii_OT3 Pyrococcus horikoshii OT3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3W6G OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3W6G FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FLC:CITRATE+ANION'>FLC</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.25&#8491;</td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">PH1217 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=70601 Pyrococcus horikoshii])</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FLC:CITRATE+ANION'>FLC</scene></td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Peroxiredoxin Peroxiredoxin], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.11.1.15 1.11.1.15] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3w6g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3w6g OCA], [https://pdbe.org/3w6g PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3w6g RCSB], [https://www.ebi.ac.uk/pdbsum/3w6g PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3w6g ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3w6g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3w6g OCA], [https://pdbe.org/3w6g PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3w6g RCSB], [https://www.ebi.ac.uk/pdbsum/3w6g PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3w6g ProSAT]</span></td></tr>
</table>
</table>
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<div style="background-color:#fffaf0;">
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== Function ==
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== Publication Abstract from PubMed ==
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[https://www.uniprot.org/uniprot/TDXH_PYRHO TDXH_PYRHO]
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The crystal structure of peroxiredoxin from the anaerobic hyperthermophilic archaeon Pyrococcus horikoshii (PhPrx) was determined at a resolution of 2.25 A. The overall structure was a ring-type decamer consisting of five homodimers. Citrate, which was included in the crystallization conditions, was bound to the peroxidatic cysteine of the active site, with two O atoms of the carboxyl group mimicking those of the substrate hydrogen peroxide. PhPrx lacked the C-terminal tail that forms a 32-residue extension of the protein in the homologous peroxiredoxin from Aeropyrum pernix (ApPrx).
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Structure of peroxiredoxin from the anaerobic hyperthermophilic archaeon Pyrococcus horikoshii.,Nakamura T, Mori A, Niiyama M, Matsumura H, Tokuyama C, Morita J, Uegaki K, Inoue T Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Jul;69(Pt 7):719-22. doi: , 10.1107/S1744309113014036. Epub 2013 Jun 27. PMID:23832195<ref>PMID:23832195</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 3w6g" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Peroxiredoxin]]
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[[Category: Pyrococcus horikoshii OT3]]
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[[Category: Pyrococcus horikoshii]]
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[[Category: Inoue T]]
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[[Category: Inoue, T]]
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[[Category: Matsumura H]]
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[[Category: Matsumura, H]]
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[[Category: Mori A]]
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[[Category: Mori, A]]
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[[Category: Morita J]]
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[[Category: Morita, J]]
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[[Category: Nakamura T]]
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[[Category: Nakamura, T]]
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[[Category: Niiyama M]]
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[[Category: Niiyama, M]]
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[[Category: Tokuyama C]]
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[[Category: Tokuyama, C]]
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[[Category: Uegaki K]]
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[[Category: Uegaki, K]]
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[[Category: Hydrogen peroxide]]
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[[Category: Oxidoreductase]]
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[[Category: Reduction]]
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[[Category: Water]]
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Current revision

Structure of peroxiredoxin from anaerobic hyperthermophilic archaeon Pyrococcus horikoshii

PDB ID 3w6g

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