4k7b
From Proteopedia
(Difference between revisions)
Line 4: | Line 4: | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[4k7b]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Chaetoceros_gracilis Chaetoceros gracilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4K7B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4K7B FirstGlance]. <br> | <table><tr><td colspan='2'>[[4k7b]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Chaetoceros_gracilis Chaetoceros gracilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4K7B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4K7B FirstGlance]. <br> | ||
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.55Å</td></tr> |
+ | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4k7b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4k7b OCA], [https://pdbe.org/4k7b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4k7b RCSB], [https://www.ebi.ac.uk/pdbsum/4k7b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4k7b ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4k7b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4k7b OCA], [https://pdbe.org/4k7b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4k7b RCSB], [https://www.ebi.ac.uk/pdbsum/4k7b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4k7b ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Function == | == Function == | ||
[https://www.uniprot.org/uniprot/B6ZHE7_9STRA B6ZHE7_9STRA] | [https://www.uniprot.org/uniprot/B6ZHE7_9STRA B6ZHE7_9STRA] | ||
- | <div style="background-color:#fffaf0;"> | ||
- | == Publication Abstract from PubMed == | ||
- | Psb31 is a fifth extrinsic protein found in photosystem II (PSII) of a centric diatom, Chaetoceros gracilis . The protein has been shown to bind directly to PSII in the absence of other extrinsic proteins and serves in part as a substitute for PsbO in supporting oxygen evolution. We report here the crystal structure of Psb31 at a resolution of 1.55 A. The structure of Psb31 was composed of two domains, one major, N-terminal four helical domain and one minor, flexible C-terminal domain. The four helices in the N-terminal domain were arranged in an up-down-up-down fold, which appeared unexpectedly to be similar to the structure of spinach PsbQ, in spite of their low sequence homology. This suggests that the centric diatom PSII contains another PsbQ-type extrinsic protein in addition to the original PsbQ protein found in the organism. On the other hand, the C-terminal domain of Psb31 has a unique structure composed of one loop and one short helix. Based on these structural analysis and chemical cross-linking experiments, residues responsible for the binding of Psb31 to PSII intrinsic proteins were suggested. The results are discussed in relation to the copy number of extrinsic proteins in higher plant PSII. | ||
- | |||
- | Crystal Structure of Psb31, a Novel Extrinsic Protein of Photosystem II from a Marine Centric Diatom and Implications for Its Binding and Function.,Nagao R, Suga M, Niikura A, Okumura A, Koua FH, Suzuki T, Tomo T, Enami I, Shen JR Biochemistry. 2013 Sep 11. PMID:23988112<ref>PMID:23988112</ref> | ||
- | |||
- | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
- | </div> | ||
- | <div class="pdbe-citations 4k7b" style="background-color:#fffaf0;"></div> | ||
==See Also== | ==See Also== | ||
- | *[[Photosystem II|Photosystem II]] | + | *[[Photosystem II 3D structures|Photosystem II 3D structures]] |
- | + | ||
- | + | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> |
Current revision
Crystal structure of Extrinsic protein in photosystem II
|
Categories: Chaetoceros gracilis | Large Structures | Enami I | Koua FHM | Nagao R | Niikura A | Okumura A | Shen JR | Suga M | Suzuki T | Tomo T