5c6f

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Current revision (09:08, 20 March 2024) (edit) (undo)
 
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== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[5c6f]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Helicobacter_pylori_J99 Helicobacter pylori J99]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5C6F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5C6F FirstGlance]. <br>
<table><tr><td colspan='2'>[[5c6f]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Helicobacter_pylori_J99 Helicobacter pylori J99]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5C6F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5C6F FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5c6f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5c6f OCA], [https://pdbe.org/5c6f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5c6f RCSB], [https://www.ebi.ac.uk/pdbsum/5c6f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5c6f ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5c6f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5c6f OCA], [https://pdbe.org/5c6f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5c6f RCSB], [https://www.ebi.ac.uk/pdbsum/5c6f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5c6f ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[https://www.uniprot.org/uniprot/FTN_HELPJ FTN_HELPJ] Iron-storage protein (By similarity).
[https://www.uniprot.org/uniprot/FTN_HELPJ FTN_HELPJ] Iron-storage protein (By similarity).
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<div style="background-color:#fffaf0;">
 
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== Publication Abstract from PubMed ==
 
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Iron and oxygen chemistry is mediated by iron proteins for many biological functions. Carboxylate-bridged diiron enzymes including ferritin have the common mechanism of oxygen activation via peroxodiferric intermediates. However, the route for iron uptake and the structural identification of intermediates still remain incomplete. The 4-fold symmetry channel of Helicobacter pylori ferritin was previously proposed as the iron-uptake route in eubacteria, but the amino acid residues at the 4-fold channel are not highly conserved. Here, we show evidence for a short path for iron uptake from His93 on the surface to the ferroxidase center in H. pylori ferritin and Escherichia coli ferritin. The amino acid residues along this path are highly conserved in Gram-negative bacteria and some archaea, and the mutants containing S20A and H93L showed significantly decreased iron oxidation. Surprisingly, the E. coli ferritin S20A crystal structure showed oxygen binding and side-on, symmetric mu-eta2:eta2 peroxodiferric and oxodiferric intermediates. The results provide the structural basis for understanding the chemical nature of intermediates in iron oxidation in bacteria and some of archaea.
 
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Structural Basis of Novel Iron-Uptake Route and Reaction Intermediates in Ferritins from Gram-Negative Bacteria.,Kim S, Lee JH, Seok JH, Park YH, Jung SW, Cho AE, Lee C, Chung MS, Kim KH J Mol Biol. 2016 Dec 4;428(24 Pt B):5007-5018. doi: 10.1016/j.jmb.2016.10.022., Epub 2016 Oct 21. PMID:27777002<ref>PMID:27777002</ref>
 
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
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</div>
 
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<div class="pdbe-citations 5c6f" style="background-color:#fffaf0;"></div>
 
==See Also==
==See Also==
*[[Ferritin 3D structures|Ferritin 3D structures]]
*[[Ferritin 3D structures|Ferritin 3D structures]]
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== References ==
 
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<references/>
 
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</StructureSection>
</StructureSection>

Current revision

Crystal structures of ferritin mutants reveal side-on binding to diiron and end-on cleavage of oxygen

PDB ID 5c6f

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