6nme

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Current revision (09:21, 20 March 2024) (edit) (undo)
 
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<SX load='6nme' size='340' side='right' viewer='molstar' caption='[[6nme]], [[Resolution|resolution]] 5.67&Aring;' scene=''>
<SX load='6nme' size='340' side='right' viewer='molstar' caption='[[6nme]], [[Resolution|resolution]] 5.67&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[6nme]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Lachnospiraceae_bacterium_nd2006 Lachnospiraceae bacterium nd2006]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6NME OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6NME FirstGlance]. <br>
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<table><tr><td colspan='2'>[[6nme]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Lachnospiraceae_bacterium_ND2006 Lachnospiraceae bacterium ND2006]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6NME OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6NME FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 5.67&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6nme FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6nme OCA], [http://pdbe.org/6nme PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6nme RCSB], [http://www.ebi.ac.uk/pdbsum/6nme PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6nme ProSAT]</span></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6nme FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6nme OCA], [https://pdbe.org/6nme PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6nme RCSB], [https://www.ebi.ac.uk/pdbsum/6nme PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6nme ProSAT]</span></td></tr>
</table>
</table>
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<div style="background-color:#fffaf0;">
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== Function ==
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== Publication Abstract from PubMed ==
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[https://www.uniprot.org/uniprot/A0A182DWE3_9FIRM A0A182DWE3_9FIRM]
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CRISPR-Cas12a (Cpf1), a type V CRISPR-associated nuclease, provides bacterial immunity against bacteriophages and plasmids but also serves as a tool for genome editing. Foreign nucleic acids are integrated into the CRISPR locus, prompting transcription of CRISPR RNAs (crRNAs) that guide Cas12a cleavage of foreign complementary DNA. However, mobile genetic elements counteract Cas12a with inhibitors, notably type V-A anti-CRISPRs (AcrVAs). We present cryoelectron microscopy structures of Cas12a-crRNA bound to AcrVA1 and AcrVA4 at 3.5 and 3.3 A resolutions, respectively. AcrVA1 is sandwiched between the recognition (REC) and nuclease (NUC) lobes of Cas12a and inserts into the binding pocket for the protospacer-adjacent motif (PAM), a short DNA sequence guiding Cas12a targeting. AcrVA1 cleaves crRNA in a Cas12a-dependent manner, inactivating Cas12a-crRNA complexes. The AcrVA4 dimer is anchored around the crRNA pseudoknot of Cas12a-crRNA, preventing required conformational changes for crRNA-DNA heteroduplex formation. These results uncover molecular mechanisms for CRISPR-Cas12a inhibition, providing insights into bacteria-phage dynamics.
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Structural Basis for the Inhibition of CRISPR-Cas12a by Anti-CRISPR Proteins.,Zhang H, Li Z, Daczkowski CM, Gabel C, Mesecar AD, Chang L Cell Host Microbe. 2019 May 27. pii: S1931-3128(19)30249-5. doi:, 10.1016/j.chom.2019.05.004. PMID:31155345<ref>PMID:31155345</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 6nme" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
__TOC__
</SX>
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[[Category: Lachnospiraceae bacterium nd2006]]
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[[Category: Lachnospiraceae bacterium ND2006]]
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Chang, L]]
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[[Category: Chang L]]
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[[Category: Li, Z]]
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[[Category: Li Z]]
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[[Category: Zhang, H]]
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[[Category: Zhang H]]
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[[Category: Rna]]
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[[Category: Unknown function-rna complex]]
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Current revision

Structure of LbCas12a-crRNA

6nme, resolution 5.67Å

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OCA

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