6pqx

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Current revision (09:27, 20 March 2024) (edit) (undo)
 
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<SX load='6pqx' size='340' side='right' viewer='molstar' caption='[[6pqx]], [[Resolution|resolution]] 4.60&Aring;' scene=''>
<SX load='6pqx' size='340' side='right' viewer='molstar' caption='[[6pqx]], [[Resolution|resolution]] 4.60&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[6pqx]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Corn_earworm_moth Corn earworm moth]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6PQX OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6PQX FirstGlance]. <br>
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<table><tr><td colspan='2'>[[6pqx]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Helicoverpa_zea Helicoverpa zea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6PQX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6PQX FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 4.6&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6pqx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6pqx OCA], [http://pdbe.org/6pqx PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6pqx RCSB], [http://www.ebi.ac.uk/pdbsum/6pqx PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6pqx ProSAT]</span></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6pqx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6pqx OCA], [https://pdbe.org/6pqx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6pqx RCSB], [https://www.ebi.ac.uk/pdbsum/6pqx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6pqx ProSAT]</span></td></tr>
</table>
</table>
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<div style="background-color:#fffaf0;">
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== Function ==
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== Publication Abstract from PubMed ==
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[https://www.uniprot.org/uniprot/B0F0C5_HELZE B0F0C5_HELZE]
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Transposons have had a pivotal role in genome evolution(1) and are believed to be the evolutionary progenitors of the RAG1-RAG2 recombinase(2), an essential component of the adaptive immune system in jawed vertebrates(3). Here we report one crystal structure and five cryo-electron microscopy structures of Transib(4,5), a RAG1-like transposase from Helicoverpa zea, that capture the entire transposition process from the apo enzyme to the terminal strand transfer complex with transposon ends covalently joined to target DNA, at resolutions of 3.0-4.6 A. These structures reveal a butterfly-shaped complex that undergoes two cycles of marked conformational changes in which the 'wings' of the transposase unfurl to bind substrate DNA, close to execute cleavage, open to release the flanking DNA and close again to capture and attack target DNA. Transib possesses unique structural elements that compensate for the absence of a RAG2 partner, including a loop that interacts with the transposition target site and an accordion-like C-terminal tail that elongates and contracts to help to control the opening and closing of the enzyme and assembly of the active site. Our findings reveal the detailed reaction pathway of a eukaryotic cut-and-paste transposase and illuminate some of the earliest steps in the evolution of the RAG recombinase.
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Structures of a RAG-like transposase during cut-and-paste transposition.,Liu C, Yang Y, Schatz DG Nature. 2019 Nov;575(7783):540-544. doi: 10.1038/s41586-019-1753-7. Epub 2019 Nov, 13. PMID:31723264<ref>PMID:31723264</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 6pqx" style="background-color:#fffaf0;"></div>
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==See Also==
==See Also==
*[[Transposase 3D structures|Transposase 3D structures]]
*[[Transposase 3D structures|Transposase 3D structures]]
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== References ==
 
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<references/>
 
__TOC__
__TOC__
</SX>
</SX>
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[[Category: Corn earworm moth]]
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[[Category: Helicoverpa zea]]
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Liu, C]]
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[[Category: Liu C]]
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[[Category: Schatz, D G]]
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[[Category: Schatz DG]]
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[[Category: Yang, Y]]
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[[Category: Yang Y]]
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[[Category: Dde family enzyme]]
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[[Category: Rag-like transposase]]
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[[Category: Recombination]]
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[[Category: Recombination-dna complex]]
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[[Category: Terminal inverted repeat]]
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[[Category: Transib]]
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Current revision

Cryo-EM structure of HzTransib/nicked TIR substrate DNA hairpin forming complex (HFC)

6pqx, resolution 4.60Å

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OCA

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