1de4
From Proteopedia
(Difference between revisions)
Line 3: | Line 3: | ||
<StructureSection load='1de4' size='340' side='right'caption='[[1de4]], [[Resolution|resolution]] 2.80Å' scene=''> | <StructureSection load='1de4' size='340' side='right'caption='[[1de4]], [[Resolution|resolution]] 2.80Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>[[1de4]] is a 9 chain structure with sequence from [https://en.wikipedia.org/wiki/ | + | <table><tr><td colspan='2'>[[1de4]] is a 9 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DE4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DE4 FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8Å</td></tr> |
- | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr> | |
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1de4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1de4 OCA], [https://pdbe.org/1de4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1de4 RCSB], [https://www.ebi.ac.uk/pdbsum/1de4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1de4 ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1de4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1de4 OCA], [https://pdbe.org/1de4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1de4 RCSB], [https://www.ebi.ac.uk/pdbsum/1de4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1de4 ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Disease == | == Disease == | ||
- | + | [https://www.uniprot.org/uniprot/HFE_HUMAN HFE_HUMAN] Defects in HFE are a cause of hemochromatosis (HFE) [MIM:[https://omim.org/entry/235200 235200]. A disorder of iron metabolism characterized by iron overload. Excess iron is deposited in a variety of organs leading to their failure, and resulting in serious illnesses including cirrhosis, hepatomas, diabetes, cardiomyopathy, arthritis, and hypogonadotropic hypogonadism. Severe effects of the disease usually do not appear until after decades of progressive iron loading.<ref>PMID:8696333</ref> <ref>PMID:9106528</ref> <ref>PMID:9024376</ref> <ref>PMID:9620340</ref> <ref>PMID:10194428</ref> <ref>PMID:10575540</ref> <ref>PMID:10401000</ref> <ref>PMID:10094552</ref> [:]<ref>PMID:11423500</ref> <ref>PMID:11446670</ref> <ref>PMID:12542741</ref> <ref>PMID:12737937</ref> <ref>PMID:14633868</ref> <ref>PMID:12584229</ref> <ref>PMID:15046077</ref> <ref>PMID:15965644</ref> <ref>PMID:18157833</ref> Defects in HFE are associated with variegate porphyria (VP) [MIM:[https://omim.org/entry/176200 176200]. Porphyrias are inherited defects in the biosynthesis of heme, resulting in the accumulation and increased excretion of porphyrins or porphyrin precursors. They are classified as erythropoietic or hepatic, depending on whether the enzyme deficiency occurs in red blood cells or in the liver. VP is the most common form of porphyria in South Africa. It is characterized by skin hyperpigmentation and hypertrichosis, abdominal pain, tachycardia, hypertension and neuromuscular disturbances. High fecal levels of protoporphyrin and coproporphyrin, increased urine uroporphyrins and iron overload are typical markers of the disease. Note=Iron overload due to HFE mutations is a precipitating or exacerbating factor in variegate porphyria. Defects in HFE are associated with susceptibility to microvascular complications of diabetes type 7 (MVCD7) [MIM:[https://omim.org/entry/612635 612635]. These are pathological conditions that develop in numerous tissues and organs as a consequence of diabetes mellitus. They include diabetic retinopathy, diabetic nephropathy leading to end-stage renal disease, and diabetic neuropathy. Diabetic retinopathy remains the major cause of new-onset blindness among diabetic adults. It is characterized by vascular permeability and increased tissue ischemia and angiogenesis. | |
== Function == | == Function == | ||
- | + | [https://www.uniprot.org/uniprot/HFE_HUMAN HFE_HUMAN] Binds to transferrin receptor (TFR) and reduces its affinity for iron-loaded transferrin.<ref>PMID:9465039</ref> | |
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Line 22: | Line 22: | ||
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1de4 ConSurf]. | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1de4 ConSurf]. | ||
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
- | <div style="background-color:#fffaf0;"> | ||
- | == Publication Abstract from PubMed == | ||
- | HFE is related to major histocompatibility complex (MHC) class I proteins and is mutated in the iron-overload disease hereditary haemochromatosis. HFE binds to the transferrin receptor (TfR), a receptor by which cells acquire iron-loaded transferrin. The 2.8 A crystal structure of a complex between the extracellular portions of HFE and TfR shows two HFE molecules which grasp each side of a twofold symmetric TfR dimer. On a cell membrane containing both proteins, HFE would 'lie down' parallel to the membrane, such that the HFE helices that delineate the counterpart of the MHC peptide-binding groove make extensive contacts with helices in the TfR dimerization domain. The structures of TfR alone and complexed with HFE differ in their domain arrangement and dimer interfaces, providing a mechanism for communicating binding events between TfR chains. The HFE-TfR complex suggests a binding site for transferrin on TfR and sheds light upon the function of HFE in regulating iron homeostasis. | ||
- | |||
- | Crystal structure of the hereditary haemochromatosis protein HFE complexed with transferrin receptor.,Bennett MJ, Lebron JA, Bjorkman PJ Nature. 2000 Jan 6;403(6765):46-53. PMID:10638746<ref>PMID:10638746</ref> | ||
- | |||
- | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
- | </div> | ||
- | <div class="pdbe-citations 1de4" style="background-color:#fffaf0;"></div> | ||
==See Also== | ==See Also== | ||
Line 40: | Line 31: | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
- | [[Category: | + | [[Category: Homo sapiens]] |
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
- | [[Category: Bennett | + | [[Category: Bennett MJ]] |
- | [[Category: Bjorkman | + | [[Category: Bjorkman PJ]] |
- | [[Category: Lebron | + | [[Category: Lebron JA]] |
- | + | ||
- | + | ||
- | + | ||
- | + | ||
- | + |
Revision as of 09:49, 20 March 2024
HEMOCHROMATOSIS PROTEIN HFE COMPLEXED WITH TRANSFERRIN RECEPTOR
|