1dt1
From Proteopedia
(Difference between revisions)
| Line 3: | Line 3: | ||
<StructureSection load='1dt1' size='340' side='right'caption='[[1dt1]], [[Resolution|resolution]] 1.80Å' scene=''> | <StructureSection load='1dt1' size='340' side='right'caption='[[1dt1]], [[Resolution|resolution]] 1.80Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[1dt1]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/ | + | <table><tr><td colspan='2'>[[1dt1]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DT1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DT1 FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8Å</td></tr> |
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1dt1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dt1 OCA], [https://pdbe.org/1dt1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1dt1 RCSB], [https://www.ebi.ac.uk/pdbsum/1dt1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1dt1 ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1dt1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dt1 OCA], [https://pdbe.org/1dt1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1dt1 RCSB], [https://www.ebi.ac.uk/pdbsum/1dt1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1dt1 ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Function == | == Function == | ||
| - | + | [https://www.uniprot.org/uniprot/CY552_THET8 CY552_THET8] This monoheme basic protein appears to function as an electron donor to cytochrome oxidase in T.thermophilus. | |
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
| Line 19: | Line 20: | ||
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1dt1 ConSurf]. | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1dt1 ConSurf]. | ||
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
| - | <div style="background-color:#fffaf0;"> | ||
| - | == Publication Abstract from PubMed == | ||
| - | We describe the design of Escherichia coli cells that synthesize a structurally perfect, recombinant cytochrome c from the Thermus thermophilus cytochrome c552 gene. Key features are (1) construction of a plasmid-borne, chimeric cycA gene encoding an Escherichia coli-compatible, N-terminal signal sequence (MetLysIleSerIleTyrAlaThrLeu AlaAlaLeuSerLeuAlaLeuProAlaGlyAla) followed by the amino acid sequence of mature Thermus cytochrome c552; and (2) coexpression of the chimeric cycA gene with plasmid-borne, host-specific cytochrome c maturation genes (ccmABCDEFGH). Approximately 1 mg of purified protein is obtained from 1 L of culture medium. The recombinant protein, cytochrome rsC552, and native cytochrome c552 have identical redox potentials and are equally active as electron transfer substrates toward cytochrome ba3, a Thermus heme-copper oxidase. Native and recombinant cytochromes c were compared and found to be identical using circular dichroism, optical absorption, resonance Raman, and 500 MHz 1H-NMR spectroscopies. The 1.7 A resolution X-ray crystallographic structure of the recombinant protein was determined and is indistinguishable from that reported for the native protein (Than, ME, Hof P, Huber R, Bourenkov GP, Bartunik HD, Buse G, Soulimane T, 1997, J Mol Biol 271:629-644). This approach may be generally useful for expression of alien cytochrome c genes in E. coli. | ||
| - | |||
| - | Integrity of thermus thermophilus cytochrome c552 synthesized by Escherichia coli cells expressing the host-specific cytochrome c maturation genes, ccmABCDEFGH: biochemical, spectral, and structural characterization of the recombinant protein.,Fee JA, Chen Y, Todaro TR, Bren KL, Patel KM, Hill MG, Gomez-Moran E, Loehr TM, Ai J, Thony-Meyer L, Williams PA, Stura E, Sridhar V, McRee DE Protein Sci. 2000 Nov;9(11):2074-84. PMID:11152119<ref>PMID:11152119</ref> | ||
| - | |||
| - | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| - | </div> | ||
| - | <div class="pdbe-citations 1dt1" style="background-color:#fffaf0;"></div> | ||
==See Also== | ==See Also== | ||
| - | *[[ | + | *[[Cytochrome c nitrite reductase|Cytochrome c nitrite reductase]] |
| - | + | ||
| - | + | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
| - | [[Category: | + | [[Category: Thermus thermophilus HB8]] |
| - | [[Category: Ai | + | [[Category: Ai J]] |
| - | [[Category: Chen | + | [[Category: Chen Y]] |
| - | [[Category: Fee | + | [[Category: Fee JA]] |
| - | [[Category: Gomez-Moran | + | [[Category: Gomez-Moran E]] |
| - | [[Category: Hill | + | [[Category: Hill MJ]] |
| - | [[Category: Loehr | + | [[Category: Loehr T]] |
| - | [[Category: McRee | + | [[Category: McRee DE]] |
| - | [[Category: Sridhar | + | [[Category: Sridhar V]] |
| - | [[Category: Stura | + | [[Category: Stura E]] |
| - | [[Category: Thony-Meyer | + | [[Category: Thony-Meyer L]] |
| - | [[Category: Williams | + | [[Category: Williams PA]] |
| - | + | ||
| - | + | ||
| - | + | ||
Revision as of 09:53, 20 March 2024
THERMUS THERMOPHILUS CYTOCHROME C552 SYNTHESIZED BY ESCHERICHIA COLI
| |||||||||||
Categories: Large Structures | Thermus thermophilus HB8 | Ai J | Chen Y | Fee JA | Gomez-Moran E | Hill MJ | Loehr T | McRee DE | Sridhar V | Stura E | Thony-Meyer L | Williams PA

