1ea2
From Proteopedia
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<StructureSection load='1ea2' size='340' side='right'caption='[[1ea2]], [[Resolution|resolution]] 1.80Å' scene=''>  | <StructureSection load='1ea2' size='340' side='right'caption='[[1ea2]], [[Resolution|resolution]] 1.80Å' scene=''>  | ||
== Structural highlights ==  | == Structural highlights ==  | ||
| - | <table><tr><td colspan='2'>[[1ea2]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1EA2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1EA2 FirstGlance]. <br>  | + | <table><tr><td colspan='2'>[[1ea2]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_putida Pseudomonas putida]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1EA2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1EA2 FirstGlance]. <br>  | 
| - | </td></tr><tr id='  | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8Å</td></tr>  | 
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ea2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ea2 OCA], [https://pdbe.org/1ea2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ea2 RCSB], [https://www.ebi.ac.uk/pdbsum/1ea2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ea2 ProSAT]</span></td></tr>  | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ea2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ea2 OCA], [https://pdbe.org/1ea2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ea2 RCSB], [https://www.ebi.ac.uk/pdbsum/1ea2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ea2 ProSAT]</span></td></tr>  | ||
</table>  | </table>  | ||
| + | == Function ==  | ||
| + | [https://www.uniprot.org/uniprot/SDIS_PSEPU SDIS_PSEPU]   | ||
== Evolutionary Conservation ==  | == Evolutionary Conservation ==  | ||
[[Image:Consurf_key_small.gif|200px|right]]  | [[Image:Consurf_key_small.gif|200px|right]]  | ||
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ea2 ConSurf].  | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ea2 ConSurf].  | ||
<div style="clear:both"></div>  | <div style="clear:both"></div>  | ||
| - | <div style="background-color:#fffaf0;">  | ||
| - | == Publication Abstract from PubMed ==  | ||
| - | Delta5-3-ketosteroid isomerase (KSI) from Pseudomonas putida Biotype B catalyzes the allylic isomerization of Delta5-3-ketosteroids to their conjugated Delta4-isomers via a dienolate intermediate. Two electrophilic catalysts, Tyr-14 and Asp-99, are involved in a hydrogen bond network that comprises Asp-99 Odelta2...O of Wat504...Tyr-14 Oeta...Tyr-55 Oeta.Tyr-30 Oeta in the active site of P. putida KSI. Even though neither Tyr-30 nor Tyr-55 plays an essential role in catalysis by the KSI, the catalytic activity of Y14F could be increased ca. 26-51-fold by the additional Y30F and/or Y55F mutation in the hydrogen bond network. To identify the structural basis for the pseudoreversion in the KSI, crystal structures of Y14F and Y14F/Y30F/Y55F have been determined at 1.8 and 2.0 A resolution, respectively. Comparisons of the two structures near the catalytic center indicate that the hydrogen bond between Asp-99 Odelta2 and C3-O of the steroid, which is perturbed by the Y14F mutation, can be partially restored to that in the wild-type enzyme by the additional Y30F/Y55F mutations. The kinetic parameters of the tyrosine mutants with the additional D99N or D99L mutation also support the idea that Asp-99 contributes to catalysis more efficiently in Y14F/Y30F/Y55F than in Y14F. In contrast to the catalytic mechanism of Y14F, the C4 proton of the steroid substrate was found to be transferred to the C6 position in Y14F/Y30F/Y55F with little exchange of the substrate 4beta-proton with a solvent deuterium based on the reaction rate in D2O. Taken together, our findings strongly suggest that the improvement in the catalytic activity of Y14F by the additional Y30F/Y55F mutations is due to the changes in the structural integrity at the catalytic site and the resulting restoration of the proton-transfer mechanism in Y14F/Y30F/Y55F.  | ||
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| - | Pseudoreversion of the catalytic activity of Y14F by the additional substitution(s) of tyrosine with phenylalanine in the hydrogen bond network of delta 5-3-ketosteroid isomerase from Pseudomonas putida biotype B.,Choi G, Ha NC, Kim MS, Hong BH, Oh BH, Choi KY Biochemistry. 2001 Jun 12;40(23):6828-35. PMID:11389596<ref>PMID:11389596</ref>  | ||
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| - | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>  | ||
| - | </div>  | ||
| - | <div class="pdbe-citations 1ea2" style="background-color:#fffaf0;"></div>  | ||
==See Also==  | ==See Also==  | ||
*[[Ketosteroid Isomerase|Ketosteroid Isomerase]]  | *[[Ketosteroid Isomerase|Ketosteroid Isomerase]]  | ||
| - | == References ==  | ||
| - | <references/>  | ||
__TOC__  | __TOC__  | ||
</StructureSection>  | </StructureSection>  | ||
[[Category: Large Structures]]  | [[Category: Large Structures]]  | ||
| - | [[Category:   | + | [[Category: Pseudomonas putida]]  | 
| - | [[Category: Choi  | + | [[Category: Choi G]]  | 
| - | [[Category: Choi  | + | [[Category: Choi KY]]  | 
| - | [[Category: Ha  | + | [[Category: Ha N-C]]  | 
| - | [[Category: Hong  | + | [[Category: Hong B-H]]  | 
| - | [[Category: Kim  | + | [[Category: Kim M-S]]  | 
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Revision as of 10:00, 20 March 2024
Pseudoreversion of the Catalytic Activity of Y14F by the Additional Tyrosine-to-Phenylalanine Substitution(s) in the Hydrogen Bond Network of Delta-5-3-Ketosteroid Isomerase from Pheudomonas putida Biotype B
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Categories: Large Structures | Pseudomonas putida | Choi G | Choi KY | Ha N-C | Hong B-H | Kim M-S

