1eu4

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:06, 20 March 2024) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='1eu4' size='340' side='right'caption='[[1eu4]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
<StructureSection load='1eu4' size='340' side='right'caption='[[1eu4]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1eu4]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"micrococcus_scarlatinae"_klein_1884 "micrococcus scarlatinae" klein 1884]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1EU4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1EU4 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1eu4]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_pyogenes Streptococcus pyogenes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1EU4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1EU4 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1et6|1et6]], [[1et9|1et9]], [[1eu3|1eu3]]</div></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1eu4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1eu4 OCA], [https://pdbe.org/1eu4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1eu4 RCSB], [https://www.ebi.ac.uk/pdbsum/1eu4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1eu4 ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1eu4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1eu4 OCA], [https://pdbe.org/1eu4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1eu4 RCSB], [https://www.ebi.ac.uk/pdbsum/1eu4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1eu4 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[https://www.uniprot.org/uniprot/SPEH_STRPY SPEH_STRPY]] Mitogenic for human peripheral blood lymphocytes.
+
[https://www.uniprot.org/uniprot/SPEH_STRPY SPEH_STRPY] Mitogenic for human peripheral blood lymphocytes.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 20: Line 20:
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1eu4 ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1eu4 ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
-
<div style="background-color:#fffaf0;">
 
-
== Publication Abstract from PubMed ==
 
-
Bacterial superantigens (SAgs) are a structurally related group of protein toxins secreted by Staphylococcus aureus and Streptococcus pyogenes. They are implicated in a range of human pathologies associated with bacterial infection whose symptoms result from SAg-mediated stimulation of a large number (2-20%) of T-cells. At the molecular level, bacterial SAgs bind to major histocompatability class II (MHC-II) molecules and disrupt the normal interaction between MHC-II and T-cell receptors (TCRs). We have determined high-resolution crystal structures of two newly identified streptococcal superantigens, SPE-H and SMEZ-2. Both structures conform to the generic bacterial superantigen folding pattern, comprising an OB-fold N-terminal domain and a beta-grasp C-terminal domain. SPE-H and SMEZ-2 also display very similar zinc-binding sites on the outer concave surfaces of their C-terminal domains. Structural comparisons with other SAgs identify two structural sub-families. Sub-families are related by conserved core residues and demarcated by variable binding surfaces for MHC-II and TCR. SMEZ-2 is most closely related to the streptococcal SAg SPE-C, and together they constitute one structural sub-family. In contrast, SPE-H appears to be a hybrid whose N-terminal domain is most closely related to the SEB sub-family and whose C-terminal domain is most closely related to the SPE-C/SMEZ-2 sub-family. MHC-II binding for both SPE-H and SMEZ-2 is mediated by the zinc ion at their C-terminal face, whereas the generic N-terminal domain MHC-II binding site found on many SAgs appears not to be present. Structural comparisons provide evidence for variations in TCR binding between SPE-H, SMEZ-2 and other members of the SAg family; the extreme potency of SMEZ-2 (active at 10(-15) g ml-1 levels) is likely to be related to its TCR binding properties. The smez gene shows allelic variation that maps onto a considerable proportion of the protein surface. This allelic variation, coupled with the varied binding modes of SAgs to MHC-II and TCR, highlights the pressure on SAgs to avoid host immune defences.
 
- 
-
Conservation and variation in superantigen structure and activity highlighted by the three-dimensional structures of two new superantigens from Streptococcus pyogenes.,Arcus VL, Proft T, Sigrell JA, Baker HM, Fraser JD, Baker EN J Mol Biol. 2000 May 26;299(1):157-68. PMID:10860729<ref>PMID:10860729</ref>
 
- 
-
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
-
</div>
 
-
<div class="pdbe-citations 1eu4" style="background-color:#fffaf0;"></div>
 
==See Also==
==See Also==
*[[Exotoxin 3D structures|Exotoxin 3D structures]]
*[[Exotoxin 3D structures|Exotoxin 3D structures]]
-
== References ==
 
-
<references/>
 
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Micrococcus scarlatinae klein 1884]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Arcus, V L]]
+
[[Category: Streptococcus pyogenes]]
-
[[Category: Baker, E N]]
+
[[Category: Arcus VL]]
-
[[Category: Baker, H M]]
+
[[Category: Baker EN]]
-
[[Category: Fraser, J D]]
+
[[Category: Baker HM]]
-
[[Category: Proft, T]]
+
[[Category: Fraser JD]]
-
[[Category: Sigrell, J A]]
+
[[Category: Proft T]]
-
[[Category: Beta grasp]]
+
[[Category: Sigrell JA]]
-
[[Category: Immune system]]
+
-
[[Category: Ob fold]]
+
-
[[Category: Superantigen fold]]
+

Current revision

CRYSTAL STRUCTURE OF THE SUPERANTIGEN SPE-H (ZINC BOUND) FROM STREPTOCOCCUS PYOGENES

PDB ID 1eu4

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools