5z9w

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:27, 27 March 2024) (edit) (undo)
 
Line 3: Line 3:
<SX load='5z9w' size='340' side='right' viewer='molstar' caption='[[5z9w]], [[Resolution|resolution]] 3.90&Aring;' scene=''>
<SX load='5z9w' size='340' side='right' viewer='molstar' caption='[[5z9w]], [[Resolution|resolution]] 3.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5z9w]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Z9W OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5Z9W FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5z9w]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Z9W OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5Z9W FirstGlance]. <br>
-
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5z9w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5z9w OCA], [http://pdbe.org/5z9w PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5z9w RCSB], [http://www.ebi.ac.uk/pdbsum/5z9w PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5z9w ProSAT]</span></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 3.9&#8491;</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5z9w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5z9w OCA], [https://pdbe.org/5z9w PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5z9w RCSB], [https://www.ebi.ac.uk/pdbsum/5z9w PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5z9w ProSAT]</span></td></tr>
</table>
</table>
-
<div style="background-color:#fffaf0;">
+
== Function ==
-
== Publication Abstract from PubMed ==
+
[https://www.uniprot.org/uniprot/NCAP_EBOZM NCAP_EBOZM] Encapsidates the genome, protecting it from nucleases. The encapsidated genomic RNA is termed the nucleocapsid and serves as template for transcription and replication. During replication, encapsidation by NP is coupled to RNA synthesis and all replicative products are resistant to nucleases.
-
Ebola virus causes haemorrhagic fever with a high fatality rate in humans and non-human primates. It belongs to the family Filoviridae in the order Mononegavirales, which are viruses that contain linear, non-segmented, negative-sense, single-stranded genomic RNA(1,2). The enveloped, filamentous virion contains the nucleocapsid, consisting of the helical nucleoprotein-RNA complex, VP24, VP30, VP35 and viral polymerase(1,3). The nucleoprotein-RNA complex acts as a scaffold for nucleocapsid formation and as a template for RNA replication and transcription by condensing RNA into the virion(4,5). RNA binding and nucleoprotein oligomerization are synergistic and do not readily occur independently(6). Although recent cryo-electron tomography studies have revealed the overall architecture of the nucleocapsid core(4,5), there has been no high-resolution reconstruction of the nucleocapsid. Here we report the structure of a recombinant Ebola virus nucleoprotein-RNA complex expressed in mammalian cells without chemical fixation, at near-atomic resolution using single-particle cryo-electron microscopy. Our structure reveals how the Ebola virus nucleocapsid core encapsidates its viral genome, its sequence-independent coordination with RNA by nucleoprotein, and the dynamic transition between the RNA-free and RNA-bound states. It provides direct structural evidence for the role of the N terminus of nucleoprotein in subunit oligomerization, and for the hydrophobic and electrostatic interactions that lead to the formation of the helical assembly. The structure is validated as representative of the native biological assembly of the nucleocapsid core by consistent dimensions and symmetry with the full virion(5). The atomic model provides a detailed mechanistic basis for understanding nucleocapsid assembly and highlights key structural features that may serve as targets for anti-viral drug development.
+
-
 
+
-
Cryo-EM structure of the Ebola virus nucleoprotein-RNA complex at 3.6 A resolution.,Sugita Y, Matsunami H, Kawaoka Y, Noda T, Wolf M Nature. 2018 Nov;563(7729):137-140. doi: 10.1038/s41586-018-0630-0. Epub 2018 Oct, 17. PMID:30333622<ref>PMID:30333622</ref>
+
-
 
+
-
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+
-
</div>
+
-
<div class="pdbe-citations 5z9w" style="background-color:#fffaf0;"></div>
+
==See Also==
==See Also==
*[[Nucleoprotein 3D structures|Nucleoprotein 3D structures]]
*[[Nucleoprotein 3D structures|Nucleoprotein 3D structures]]
-
== References ==
 
-
<references/>
 
__TOC__
__TOC__
</SX>
</SX>
-
[[Category: Human]]
+
[[Category: Homo sapiens]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Kawaoka, Y]]
+
[[Category: Synthetic construct]]
-
[[Category: Matsunami, H]]
+
[[Category: Kawaoka Y]]
-
[[Category: Noda, T]]
+
[[Category: Matsunami H]]
-
[[Category: Sugita, Y]]
+
[[Category: Noda T]]
-
[[Category: Wolf, M]]
+
[[Category: Sugita Y]]
-
[[Category: Ebolavirus]]
+
[[Category: Wolf M]]
-
[[Category: Helical]]
+
-
[[Category: Nucleocapsid]]
+
-
[[Category: Nucleoprotein]]
+
-
[[Category: Rna]]
+
-
[[Category: Viral protein]]
+

Current revision

Ebola virus nucleoprotein-RNA complex

5z9w, resolution 3.90Å

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools