5ztx

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Current revision (10:29, 27 March 2024) (edit) (undo)
 
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<StructureSection load='5ztx' size='340' side='right'caption='[[5ztx]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
<StructureSection load='5ztx' size='340' side='right'caption='[[5ztx]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[5ztx]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ZTX OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5ZTX FirstGlance]. <br>
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<table><tr><td colspan='2'>[[5ztx]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_fluvialis Vibrio fluvialis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ZTX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5ZTX FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5ztx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ztx OCA], [http://pdbe.org/5ztx PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5ztx RCSB], [http://www.ebi.ac.uk/pdbsum/5ztx PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5ztx ProSAT]</span></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5ztx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ztx OCA], [https://pdbe.org/5ztx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5ztx RCSB], [https://www.ebi.ac.uk/pdbsum/5ztx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5ztx ProSAT]</span></td></tr>
</table>
</table>
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<div style="background-color:#fffaf0;">
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== Function ==
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== Publication Abstract from PubMed ==
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[https://www.uniprot.org/uniprot/F2XBU9_VIBFL F2XBU9_VIBFL]
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Omega (omega)-transaminase catalyzes the transfer of an amino group from a non-alpha position amino acid, or an amine compound with no carboxylic group, to an amino acceptor, and has been studied intensively because of its high potential utility in industry and pharmatheutics. The omega-transaminase from Vibrio fluvialis JS17 (Vfat) is an amine:pyruvate transaminase capable of the stereo-selective transamination of arylic chiral amines. This enzyme exhibits extraordinary enantio-selectivity, and has a rapid reaction rate for chiral amine substrates. In this study, we report the crystal structure of the apo form of Vfat. The overall structure of Vfat was typical of other class III aminotransferase exhibiting an N-terminal helical domain, a small domain, and a large domain. Interestingly, the two subunits of apo Vfat in the asymmetric unit had different structures. A comparison of the overall structure to other transaminases, revealed that the structures of the N-terminal helical domain and the large domain can be affected by cofactor occupancy, but the structural rearrangement in these regions can occur independently.
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Structural dynamics of the transaminase active site revealed by the crystal structure of a co-factor free omega-transaminase from Vibrio fluvialis JS17.,Shin YC, Yun H, Park HH Sci Rep. 2018 Jul 30;8(1):11454. doi: 10.1038/s41598-018-29846-0. PMID:30061559<ref>PMID:30061559</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 5ztx" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Human]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Park, H H]]
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[[Category: Vibrio fluvialis]]
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[[Category: Shin, Y C]]
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[[Category: Park HH]]
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[[Category: Transaminase]]
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[[Category: Shin YC]]
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[[Category: Transferase]]
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Current revision

co-factor free Transaminase

PDB ID 5ztx

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